RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FRMPD4Q14CM0 1322 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 LOC102724159A0A0B4J2E5 919 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 MAFGO15525 162 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 CA12O43570 354 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 TLR2O60603 784 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 EIF2AK2P19525 551 aaKnown RBP17.24■□□□□ 0.35
TRIM28-209ENST00000597423 MAP2K2P36507 400 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 PWP2Q15269 919 aaKnown RBP17.24■□□□□ 0.35
TRIM28-209ENST00000597423 RESP18Q5W5W9 173 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 NLRX1Q86UT6 975 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 PLA2G4DQ86XP0 818 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 GPT2Q8TD30 523 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 MXRA8Q9BRK3 442 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 PDCD2LQ9BRP1 358 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 CSRNP2Q9H175 543 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 TMEM60Q9H2L4 133 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 SLC5A4Q9NY91 659 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 PCDHA12Q9UN75 941 aa17.24■□□□□ 0.35
TRIM28-209ENST00000597423 MEIS1O00470 390 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 EDIL3O43854 480 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 LETM1O95202 739 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-209ENST00000597423 NR3C2P08235 984 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 BCRP11274 1271 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 MYCLP12524 364 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-209ENST00000597423 TXKP42681 527 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 FXR2P51116 673 aaKnown RBP eCLIP17.23■□□□□ 0.352e-11■■■□□ 19.1
TRIM28-209ENST00000597423 FAM160A1Q05DH4 1040 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 PGM5Q15124 567 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 VSIG10LQ86VR7 867 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 POTEDQ86YR6 584 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 CDHR1Q96JP9 859 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 CLIC6Q96NY7 704 aa17.23■□□□□ 0.35
TRIM28-209ENST00000597423 DDX19AQ9NUU7 478 aaKnown RBP17.23■□□□□ 0.35
TRIM28-209ENST00000597423 PARP14Q460N5 1801 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 FAM86B1E9PN63 330 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 SLC37A4O43826 429 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 PEX10O60683 326 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 KINO60870 393 aaKnown RBP17.22■□□□□ 0.35
TRIM28-209ENST00000597423 EIF3JO75822 258 aaKnown RBP17.22■□□□□ 0.35
TRIM28-209ENST00000597423 FAM86B2P0C5J1 330 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 UBA7P41226 1012 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 UBXN2AP68543 259 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 STXBP2Q15833 593 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 GNPTABQ3T906 1256 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 PLEKHH3Q7Z736 793 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 TTC12Q9H892 705 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-209ENST00000597423 EFCC1Q9HA90 598 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 JADE2Q9NQC1 790 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 CPA4Q9UI42 421 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 KCNH3Q9ULD8 1083 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 UBIAD1Q9Y5Z9 338 aa17.22■□□□□ 0.35
TRIM28-209ENST00000597423 FAM237AA0A1B0GTK4 181 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 A0A1B0GVL5 298 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 SLC26A4O43511 780 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 TECP42680 631 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 SYKP43405 635 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 SHC4Q6S5L8 630 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 C17orf99Q6UX52 265 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 FAM133AQ8N9E0 248 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 PORCNQ9H237 461 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 KCNMB3Q9NPA1 279 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 LRWD1Q9UFC0 647 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 CCDC39Q9UFE4 941 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 USP25Q9UHP3 1055 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 HOOK1Q9UJC3 728 aaKnown RBP17.21■□□□□ 0.35
TRIM28-209ENST00000597423 MRVI1Q9Y6F6 885 aa17.21■□□□□ 0.35
TRIM28-209ENST00000597423 TCHHQ07283 1943 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 MYH15Q9Y2K3 1946 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 IGLV3-22A0A075B6J6 115 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 SLC15A5A6NIM6 579 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 ASB14A6NK59 587 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 CTAGE5O15320 804 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 MSH4O15457 936 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 PFKFB1P16118 471 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 PDE4DQ08499 809 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 MTMR1Q13613 665 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 CCDC183Q5T5S1 534 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 CAVIN1Q6NZI2 390 aaKnown RBP17.2■□□□□ 0.34
TRIM28-209ENST00000597423 DPP9Q86TI2 863 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 ERMNQ8TAM6 284 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 HAS1Q92839 578 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 GPRASP2Q96D09 838 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 ZNF577Q9BSK1 485 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 WDR11Q9BZH6 1224 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 DACT1Q9NYF0 836 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 TCEAL9Q9UHQ7 104 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 ADGRA2Q96PE1 1338 aa17.2■□□□□ 0.34
TRIM28-209ENST00000597423 A0A0G2JMZ2 1700 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 DNAJC25-GNG10A0A024R161 153 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 LIG1P18858 919 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 ALDH5A1P51649 535 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-209ENST00000597423 NDUFA8P51970 172 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 MRPS9P82933 396 aaKnown RBP17.19■□□□□ 0.34
TRIM28-209ENST00000597423 CNTN2Q02246 1040 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 CRHR2Q13324 411 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 IL17AQ16552 155 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 KRT79Q5XKE5 535 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 KANK3Q6NY19 840 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 GPR142Q7Z601 462 aa17.19■□□□□ 0.34
TRIM28-209ENST00000597423 FMR1NBQ8N0W7 255 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms