RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 USP17L11C9JVI0 530 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 USP17L18D6R9N7 530 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 USP17L22D6RA61 530 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 USP17L17D6RBQ6 530 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 USP17L19D6RCP7 530 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 USP17L20D6RJB6 530 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 PPP1R11O60927 126 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-208ENST00000597172 CYBAP13498 195 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 SCG2P13521 617 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 HOXA7P31268 230 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-208ENST00000597172 HERVK_113P62684 666 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 ERVK-9P63128 1117 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 ERVK-24P63145 666 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 USP17L24Q0WX57 530 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 PKP1Q13835 747 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 MFSD5Q6N075 450 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 FAM178BQ8IXR5 827 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 PRPF38AQ8NAV1 312 aaKnown RBP10.87□□□□□ -0.67
TRIM28-208ENST00000597172 FAM184AQ8NB25 1140 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 KIFC2Q96AC6 838 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 RRP36Q96EU6 259 aaKnown RBP10.87□□□□□ -0.67
TRIM28-208ENST00000597172 MFSD14AQ96MC6 490 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 SLF1Q9BQI6 1058 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 ALG1Q9BT22 464 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 TANGO6Q9C0B7 1094 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 ADAMTS5Q9UNA0 930 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 ZDHHC9Q9Y397 364 aa10.87□□□□□ -0.67
TRIM28-208ENST00000597172 FASNP49327 2511 aaKnown RBP10.87□□□□□ -0.67
TRIM28-208ENST00000597172 DCDC2CA8MYV0 355 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 RFXAPO00287 272 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 ZBTB5O15062 677 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 DCXO43602 365 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 FLOT1O75955 427 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 ACRP10323 421 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 DSG3P32926 999 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 FOSBP53539 338 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 PTPN5P54829 565 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 AKAP17AQ02040 695 aaKnown RBP10.86□□□□□ -0.67
TRIM28-208ENST00000597172 FAAP100Q0VG06 881 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 IKQ13123 557 aaPredicted RBP10.86□□□□□ -0.67
TRIM28-208ENST00000597172 COG2Q14746 738 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 QRICH1Q2TAL8 776 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 WWC2Q6AWC2 1192 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 TYW1BQ6NUM6 668 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 PSRC1Q6PGN9 363 aaPredicted RBP10.86□□□□□ -0.67
TRIM28-208ENST00000597172 HFE2Q6ZVN8 426 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 HOMER1Q86YM7 354 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 FBXO18Q8NFZ0 1043 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 RANBP17Q9H2T7 1088 aaKnown RBP10.86□□□□□ -0.67
TRIM28-208ENST00000597172 PPP1R9AQ9ULJ8 1098 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 PHF24Q9UPV7 400 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 MTMR6Q9Y217 621 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 TRIOO75962 3097 aa10.86□□□□□ -0.67
TRIM28-208ENST00000597172 SMCHD1A6NHR9 2005 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 ZNF536O15090 1300 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 SLC15A5A6NIM6 579 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 STXBP3O00186 592 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 ADAMTS3O15072 1205 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 SEPT4O43236 478 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 STX6O43752 255 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 BRD1O95696 1058 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 HOXC6P09630 235 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 NPY5RQ15761 445 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 CDC37Q16543 378 aaPredicted RBP10.85□□□□□ -0.67
TRIM28-208ENST00000597172 KRT40Q6A162 431 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 SAMD1Q6SPF0 538 aaPredicted RBP10.85□□□□□ -0.67
TRIM28-208ENST00000597172 RGS22Q8NE09 1264 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 PRSS33Q8NF86 280 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 REPS2Q8NFH8 660 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 WASF1Q92558 559 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 GPKOWQ92917 476 aaPredicted RBP eCLIP10.85□□□□□ -0.67
TRIM28-208ENST00000597172 ATG4CQ96DT6 458 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 C8orf76Q96K31 380 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 TOX2Q96NM4 488 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 PAGR1Q9BTK6 254 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 MTIF3Q9H2K0 278 aaKnown RBP10.85□□□□□ -0.67
TRIM28-208ENST00000597172 SLC38A10Q9HBR0 1119 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 BARHL2Q9NY43 387 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 HOXC10Q9NYD6 342 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 VPS54Q9P1Q0 977 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 CIZ1Q9ULV3 898 aaPredicted RBP10.85□□□□□ -0.67
TRIM28-208ENST00000597172 KCNJ14Q9UNX9 436 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 SPTBN2O15020 2390 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 EP300Q09472 2414 aaPredicted RBP10.85□□□□□ -0.67
TRIM28-208ENST00000597172 LOC285556D6RIA3 1793 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 GBF1Q92538 1859 aa10.85□□□□□ -0.67
TRIM28-208ENST00000597172 DCHS1Q96JQ0 3298 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 POTEB3A0JP26 581 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 SPDYE16A6NNV3 312 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-208ENST00000597172 VWA5AO00534 786 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 CSF2RAP15509 400 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 TAL1P17542 331 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-208ENST00000597172 PDCP20941 246 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 RABGGTBP53611 331 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 GUCY1B3Q02153 619 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 POTEBQ6S5H4 581 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 ANKRD33Q7Z3H0 272 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 HEATR3Q7Z4Q2 680 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 TMEM199Q8N511 208 aa10.84□□□□□ -0.67
TRIM28-208ENST00000597172 NPLOC4Q8TAT6 608 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms