RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 SRBD1Q8N5C6 995 aaKnown RBP12.19□□□□□ -0.46
LIG1-213ENST00000596672 NSUN6Q8TEA1 469 aaKnown RBP12.19□□□□□ -0.46
LIG1-213ENST00000596672 CDX2Q99626 313 aaPredicted RBP12.19□□□□□ -0.46
LIG1-213ENST00000596672 PNMA2Q9UL42 364 aa12.19□□□□□ -0.46
LIG1-213ENST00000596672 MRPL11Q9Y3B7 192 aaKnown RBP12.19□□□□□ -0.46
LIG1-213ENST00000596672 BRWD1Q9NSI6 2320 aa12.19□□□□□ -0.46
LIG1-213ENST00000596672 MROH7Q68CQ1 1323 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 hCG_1642624A0A1W2PR95 340 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 MMP3P08254 477 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 MRPS9P82933 396 aaKnown RBP12.18□□□□□ -0.46
LIG1-213ENST00000596672 TCTN1Q2MV58 587 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 ADCK5Q3MIX3 580 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 BMP2KLQ5H9B9 411 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 ZNF654Q8IZM8 581 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 DHX38Q92620 1227 aaKnown RBP12.18□□□□□ -0.46
LIG1-213ENST00000596672 WNT8BQ93098 351 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 TCEANC2Q96MN5 208 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 MTG1Q9BT17 334 aaPredicted RBP12.18□□□□□ -0.46
LIG1-213ENST00000596672 HIPK3Q9H422 1215 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 IL23AQ9NPF7 189 aa12.18□□□□□ -0.46
LIG1-213ENST00000596672 PRRC2BQ5JSZ5 2229 aaKnown RBP12.17□□□□□ -0.46
LIG1-213ENST00000596672 PNMA6FA0A0J9YX94 578 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 TRDNQ13061 729 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 TTLL4Q14679 1199 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 GRIN2CQ14957 1233 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 PGM5Q15124 567 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 ARHGEF16Q5VV41 709 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 RALYLQ86SE5 291 aaKnown RBP12.17□□□□□ -0.46
LIG1-213ENST00000596672 MCF2L2Q86YR7 1114 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 MYLIPQ8WY64 445 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 IWS1Q96ST2 819 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 PBX4Q9BYU1 374 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 POLR3EQ9NVU0 708 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 BRPF3Q9ULD4 1205 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 TANC1Q9C0D5 1861 aa12.17□□□□□ -0.46
LIG1-213ENST00000596672 FRMPD4Q14CM0 1322 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 BDP1A6H8Y1 2624 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 MEIS2O14770 477 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 ADAMTS3O15072 1205 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 NKRFO15226 690 aaKnown RBP eCLIP12.16□□□□□ -0.46
LIG1-213ENST00000596672 ZEB2O60315 1214 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 EIF3JO75822 258 aaKnown RBP12.16□□□□□ -0.46
LIG1-213ENST00000596672 ARHGEF15O94989 841 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 MYCLP12524 364 aaPredicted RBP12.16□□□□□ -0.46
LIG1-213ENST00000596672 HOXD8P13378 290 aaPredicted RBP12.16□□□□□ -0.46
LIG1-213ENST00000596672 DNAJB2P25686 324 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 CPT1AP50416 773 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 ZNF200P98182 395 aaPredicted RBP12.16□□□□□ -0.46
LIG1-213ENST00000596672 EXOSC10Q01780 885 aaKnown RBP12.16□□□□□ -0.46
LIG1-213ENST00000596672 FUT2Q10981 343 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 PPIGQ13427 754 aaKnown RBP eCLIP12.16□□□□□ -0.461e-8■■□□□ 12.3
LIG1-213ENST00000596672 STXBP2Q15833 593 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 HSDL1Q3SXM5 330 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 GDF6Q6KF10 455 aaPredicted RBP12.16□□□□□ -0.46
LIG1-213ENST00000596672 TRAF7Q6Q0C0 670 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 USP17L6PQ6QN14 398 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 CENPQQ7L2Z9 268 aaPredicted RBP12.16□□□□□ -0.46
LIG1-213ENST00000596672 OTOP2Q7RTS6 562 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 FCHSD1Q86WN1 690 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 HERVK_113Q902F9 699 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 OSBPL7Q9BZF2 842 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 MAF1Q9H063 256 aa12.16□□□□□ -0.46
LIG1-213ENST00000596672 FAM217BQ9NTX9 383 aaPredicted RBP12.16□□□□□ -0.46
LIG1-213ENST00000596672 YBX2Q9Y2T7 364 aaKnown RBP12.16□□□□□ -0.46
LIG1-213ENST00000596672 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.15□□□□□ -0.46
LIG1-213ENST00000596672 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.15□□□□□ -0.46
LIG1-213ENST00000596672 HAS3O00219 553 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 TLR3O15455 904 aaKnown RBP12.15□□□□□ -0.46
LIG1-213ENST00000596672 GH1P01241 217 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 ZNF286BP0CG31 522 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 CPA1P15085 419 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 MYOGP15173 224 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 ZNF697Q5TEC3 545 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 MYSM1Q5VVJ2 828 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 TYW1BQ6NUM6 668 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 TMEM199Q8N511 208 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 USP38Q8NB14 1042 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 EMID1Q96A84 441 aaPredicted RBP12.15□□□□□ -0.46
LIG1-213ENST00000596672 SPZ1Q9BXG8 430 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 ANO2Q9NQ90 1003 aa12.15□□□□□ -0.46
LIG1-213ENST00000596672 MUC3AQ02505 3323 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 GCOM1H8Y6P7 765 aaPredicted RBP12.14□□□□□ -0.47
LIG1-213ENST00000596672 DDAH1O94760 285 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 POLR2MP0CAP2 368 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 UBA1P22314 1058 aaKnown RBP12.14□□□□□ -0.47
LIG1-213ENST00000596672 MCM5P33992 734 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 LIFRP42702 1097 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 RABGGTBP53611 331 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 CHMP4BP1P59074 171 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 ADGRE1Q14246 886 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 MBTPS1Q14703 1052 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 TRIM71Q2Q1W2 868 aaKnown RBP12.14□□□□□ -0.47
LIG1-213ENST00000596672 FAM47CQ5HY64 1035 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 CELF3Q5SZQ8 465 aaKnown RBP12.14□□□□□ -0.47
LIG1-213ENST00000596672 NFRKBQ6P4R8 1299 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 SPRED2Q7Z698 418 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 CATIPQ7Z7H3 387 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 SLC17A8Q8NDX2 589 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 MAP3K14Q99558 947 aa12.14□□□□□ -0.47
LIG1-213ENST00000596672 HDAC6Q9UBN7 1215 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms