RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 RBM27Q9P2N5 1060 aaKnown RBP12.73□□□□□ -0.37
LIG1-211ENST00000596457 MYADML2A6NDP7 307 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 SPDYE3A6NKU9 549 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 hCG_1984214I3L0E3 225 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 DNM1LO00429 736 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 SORBS3O60504 671 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 CDKL5O76039 1030 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 TXNP10599 105 aaKnown RBP12.72□□□□□ -0.37
LIG1-211ENST00000596457 EDNRBP24530 442 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 ATN1P54259 1190 aaPredicted RBP12.72□□□□□ -0.37
LIG1-211ENST00000596457 GHRHRQ02643 423 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 LY6KQ17RY6 165 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 TLK2Q86UE8 772 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 ZNF713Q8N859 430 aaPredicted RBP12.72□□□□□ -0.37
LIG1-211ENST00000596457 OR6J1Q8NGC5 347 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 VTI1AQ96AJ9 217 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 BACH2Q9BYV9 841 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 RIC8AQ9NPQ8 531 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 TMEM260Q9NX78 707 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 VPS54Q9P1Q0 977 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 PCDHA6Q9UN73 950 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 PCDHA8Q9Y5H6 950 aa12.72□□□□□ -0.37
LIG1-211ENST00000596457 PIK3CDO00329 1044 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 ADAMTS4O75173 837 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 EIF3JO75822 258 aaKnown RBP12.71□□□□□ -0.37
LIG1-211ENST00000596457 FOSBP53539 338 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 NLRP5P59047 1200 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 TTLL4Q14679 1199 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 KCNA10Q16322 511 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 DUSP28Q4G0W2 176 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 GNASQ5JWF2 1037 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 JAKMIP3Q5VZ66 844 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 PPP1R18Q6NYC8 613 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 SCFD2Q8WU76 684 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 CCDC12Q8WUD4 166 aaPredicted RBP12.71□□□□□ -0.37
LIG1-211ENST00000596457 AIFM3Q96NN9 605 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 EHMT1Q9H9B1 1298 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 C6orf50Q9HD87 102 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 LIMCH1Q9UPQ0 1083 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 MRVI1Q9Y6F6 885 aa12.71□□□□□ -0.37
LIG1-211ENST00000596457 BRCA2P51587 3418 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 RBM47A0AV96 593 aaKnown RBP12.7□□□□□ -0.38
LIG1-211ENST00000596457 ARIH2O95376 493 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 DEXIO95424 95 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 GJA9P57773 515 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 RABEP1Q15276 862 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 VSIG10LQ86VR7 867 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 CCDC83Q8IWF9 413 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 GTF3C6Q969F1 213 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 TBC1D32Q96NH3 1257 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 GNEQ9Y223 722 aaKnown RBP12.7□□□□□ -0.38
LIG1-211ENST00000596457 ALPK3Q96L96 1907 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 DOCK5Q9H7D0 1870 aa12.7□□□□□ -0.38
LIG1-211ENST00000596457 A0A1W2PPC1 479 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 ADAMTS3O15072 1205 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 ST18O60284 1047 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 CTDNEP1O95476 244 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 ASGR1P07306 291 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 MYL3P08590 195 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 GNA11P29992 359 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 ACLYP53396 1101 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 MRPS9P82933 396 aaKnown RBP12.69□□□□□ -0.38
LIG1-211ENST00000596457 FSCN1Q16658 493 aaKnown RBP12.69□□□□□ -0.38
LIG1-211ENST00000596457 C7orf61Q8IZ16 206 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 PCSK9Q8NBP7 692 aaKnown RBP12.69□□□□□ -0.38
LIG1-211ENST00000596457 KLHDC9Q8NEP7 349 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 CCDC148Q8NFR7 591 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 RASGRP4Q8TDF6 673 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 ANO3Q9BYT9 981 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 GLT8D2Q9H1C3 349 aa12.69□□□□□ -0.38
LIG1-211ENST00000596457 UPF3AQ9H1J1 476 aaKnown RBP12.69□□□□□ -0.38
LIG1-211ENST00000596457 ORC3Q9UBD5 711 aaPredicted RBP12.69□□□□□ -0.38
LIG1-211ENST00000596457 A0A1W2PQ45 241 aaPredicted RBP12.68□□□□□ -0.38
LIG1-211ENST00000596457 A0A1W2PQY0 241 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 NKRFO15226 690 aaKnown RBP eCLIP12.68□□□□□ -0.38
LIG1-211ENST00000596457 ZEB2O60315 1214 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 FOSP01100 380 aaPredicted RBP12.68□□□□□ -0.38
LIG1-211ENST00000596457 GH1P01241 217 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 COL6A1P12109 1028 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 ZNF76P36508 570 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 CHMP4BP1P59074 171 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 LRRC26Q2I0M4 334 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 PCNX4Q63HM2 1172 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 SLC39A5Q6ZMH5 540 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 NLRX1Q86UT6 975 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 ZSCAN31Q96LW9 406 aaPredicted RBP12.68□□□□□ -0.38
LIG1-211ENST00000596457 TSEN34Q9BSV6 310 aaKnown RBP12.68□□□□□ -0.38
LIG1-211ENST00000596457 ZMYND12Q9H0C1 365 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 PKD2L1Q9P0L9 805 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 DDX41Q9UJV9 622 aaKnown RBP12.68□□□□□ -0.38
LIG1-211ENST00000596457 KCNJ14Q9UNX9 436 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 PHF24Q9UPV7 400 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 ATP11BQ9Y2G3 1177 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 Q9Y3F1 56 aa12.68□□□□□ -0.38
LIG1-211ENST00000596457 FRMPD4Q14CM0 1322 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 ESYT2A0FGR8 921 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 CTAGE5O15320 804 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 JAK2O60674 1132 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 RGS20O76081 388 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 XBP1P17861 261 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms