RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TOX2Q96NM4 488 aa17.45■□□□□ 0.38
TRIM28-205ENST00000595028 PDCD2LQ9BRP1 358 aa17.45■□□□□ 0.38
TRIM28-205ENST00000595028 BRPF3Q9ULD4 1205 aa17.45■□□□□ 0.38
TRIM28-205ENST00000595028 CNTNAP5Q8WYK1 1306 aa17.45■□□□□ 0.38
TRIM28-205ENST00000595028 TRIM43BA6NCK2 446 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 ARVCFO00192 962 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 ZBTB43O43298 467 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 TXNP10599 105 aaKnown RBP17.44■□□□□ 0.38
TRIM28-205ENST00000595028 PLA2G5P39877 138 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 CPT1AP50416 773 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 RCAN1P53805 252 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 RTN1Q16799 776 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 TJAP1Q5JTD0 557 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 C9orf50Q5SZB4 431 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 CCDC62Q6P9F0 684 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 SEPT14Q6ZU15 432 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 COPS5Q92905 334 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 VTI1AQ96AJ9 217 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 TRIM43Q96BQ3 446 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-205ENST00000595028 RBM28Q9NW13 759 aaKnown RBP17.44■□□□□ 0.38
TRIM28-205ENST00000595028 FRMPD4Q14CM0 1322 aa17.44■□□□□ 0.38
TRIM28-205ENST00000595028 KLF18A0A0U1RQI7 1052 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 DCDC2CA8MYV0 355 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 KIAA0355O15063 1070 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 EIF3JO75822 258 aaKnown RBP17.43■□□□□ 0.38
TRIM28-205ENST00000595028 CPA1P15085 419 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 CDK7P50613 346 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 FAAP100Q0VG06 881 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 PGM5Q15124 567 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 BLOC1S2Q6QNY1 142 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 IL31RAQ8NI17 732 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 POLR3EQ9NVU0 708 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 BDP1A6H8Y1 2624 aa17.43■□□□□ 0.38
TRIM28-205ENST00000595028 GOLGA8AA7E2F4 631 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 GOLGA8BA8MQT2 603 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 RPS6KB1P23443 525 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 SMAD3P84022 425 aaKnown RBP17.42■□□□□ 0.38
TRIM28-205ENST00000595028 FGD1P98174 961 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 PURAQ00577 322 aaKnown RBP17.42■□□□□ 0.38
TRIM28-205ENST00000595028 BRDTQ58F21 947 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-205ENST00000595028 Q6ZUG5 572 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 FCHSD1Q86WN1 690 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 FAM126BQ8IXS8 530 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 CCDC82Q8N4S0 544 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 SLC43A3Q8NBI5 491 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 TBX21Q9UL17 535 aa17.42■□□□□ 0.38
TRIM28-205ENST00000595028 NID2Q14112 1375 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 MYH7BA7E2Y1 1941 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 hCG_1642624A0A1W2PR95 340 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 A6NJR5 290 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 PIK3CDO00329 1044 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 RGS20O76081 388 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 MYCLP12524 364 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-205ENST00000595028 CASTP20810 708 aaKnown RBP17.41■□□□□ 0.38
TRIM28-205ENST00000595028 PSMA5P28066 241 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 CCND2P30279 289 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 ARHGAP1Q07960 439 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 FUT2Q10981 343 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 ITGA7Q13683 1181 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 VSIG10LQ86VR7 867 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 USP38Q8NB14 1042 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 BADQ92934 168 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 CUL5Q93034 780 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 TMEM39AQ9NV64 488 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 MRVI1Q9Y6F6 885 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 GRIN2DO15399 1336 aa17.41■□□□□ 0.38
TRIM28-205ENST00000595028 MEIS2O14770 477 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 GH1P01241 217 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 MYL3P08590 195 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 ITGB8P26012 769 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 PSMC6P62333 389 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 APOBRQ0VD83 1088 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 LY6KQ17RY6 165 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 USP17L6PQ6QN14 398 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 FBXL16Q8N461 479 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 SMARCC2Q8TAQ2 1214 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 GPKOWQ92917 476 aaPredicted RBP eCLIP17.4■□□□□ 0.38
TRIM28-205ENST00000595028 BRF1Q92994 677 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 FAM122AQ96E09 287 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 MTG1Q9BT17 334 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-205ENST00000595028 USP26Q9BXU7 913 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 SEZ6LQ9BYH1 1024 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 AGXT2Q9BYV1 514 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 DDX41Q9UJV9 622 aaKnown RBP17.4■□□□□ 0.38
TRIM28-205ENST00000595028 NCOR1O75376 2440 aa17.4■□□□□ 0.38
TRIM28-205ENST00000595028 TMEM265A0A087WTH1 108 aa17.39■□□□□ 0.37
TRIM28-205ENST00000595028 TLR3O15455 904 aaKnown RBP17.39■□□□□ 0.37
TRIM28-205ENST00000595028 MMP3P08254 477 aa17.39■□□□□ 0.37
TRIM28-205ENST00000595028 RAG1P15918 1043 aa17.39■□□□□ 0.37
TRIM28-205ENST00000595028 CDC27P30260 824 aa17.39■□□□□ 0.37
TRIM28-205ENST00000595028 METAP2P50579 478 aaKnown RBP eCLIP17.39■□□□□ 0.373e-8■□□□□ 10.8
TRIM28-205ENST00000595028 HEATR3Q7Z4Q2 680 aa17.39■□□□□ 0.37
TRIM28-205ENST00000595028 EMID1Q96A84 441 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-205ENST00000595028 FAM217BQ9NTX9 383 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-205ENST00000595028 NAP1L2Q9ULW6 460 aaPredicted RBP17.39■□□□□ 0.37
TRIM28-205ENST00000595028 DOCK5Q9H7D0 1870 aa17.38■□□□□ 0.37
TRIM28-205ENST00000595028 KPNA6O60684 536 aa17.38■□□□□ 0.37
TRIM28-205ENST00000595028 CD4P01730 458 aa17.38■□□□□ 0.37
TRIM28-205ENST00000595028 WWC2Q6AWC2 1192 aa17.38■□□□□ 0.37
TRIM28-205ENST00000595028 PPP1R18Q6NYC8 613 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms