RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 CCDC62Q6P9F0 684 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 VSIG10LQ86VR7 867 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 C22orf23Q9BZE7 217 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 RIC8AQ9NPQ8 531 aa16.73■□□□□ 0.27
VRK3-206ENST00000594090 CPLX1O14810 134 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 PFKFB2O60825 505 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 ASGR1P07306 291 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 TXNP10599 105 aaKnown RBP16.72■□□□□ 0.27
VRK3-206ENST00000594090 RBM25P49756 843 aaKnown RBP16.72■□□□□ 0.27
VRK3-206ENST00000594090 ADCY7P51828 1080 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 SCRN1Q12765 414 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 PRPF38BQ5VTL8 546 aaKnown RBP16.72■□□□□ 0.27
VRK3-206ENST00000594090 CPLX2Q6PUV4 134 aaKnown RBP16.72■□□□□ 0.27
VRK3-206ENST00000594090 TEX2Q8IWB9 1127 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 OR6J1Q8NGC5 347 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 COPS5Q92905 334 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 KIF2CQ99661 725 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 SLKQ9H2G2 1235 aaPredicted RBP16.72■□□□□ 0.27
VRK3-206ENST00000594090 DNAH12Q6ZR08 3092 aa16.72■□□□□ 0.27
VRK3-206ENST00000594090 SMCO2A6NFE2 343 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 SPDYE3A6NKU9 549 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 STAM2O75886 525 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 RGS20O76081 388 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 MRPS9P82933 396 aaKnown RBP16.71■□□□□ 0.27
VRK3-206ENST00000594090 SNX17Q15036 470 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 PCNX4Q63HM2 1172 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 SLC39A5Q6ZMH5 540 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 TRIM22Q8IYM9 498 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 C7orf61Q8IZ16 206 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 CCDC12Q8WUD4 166 aaPredicted RBP16.71■□□□□ 0.27
VRK3-206ENST00000594090 NR2E3Q9Y5X4 410 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 MRVI1Q9Y6F6 885 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 PDE4DIPQ5VU43 2346 aa16.71■□□□□ 0.27
VRK3-206ENST00000594090 ESYT2A0FGR8 921 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 CPT1AP50416 773 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 RTP1P59025 263 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 SSRP1Q08945 709 aaKnown RBP16.7■□□□□ 0.26
VRK3-206ENST00000594090 LY6KQ17RY6 165 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 ZFP91Q96JP5 570 aaPredicted RBP16.7■□□□□ 0.26
VRK3-206ENST00000594090 ZMYND12Q9H0C1 365 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 GLT8D2Q9H1C3 349 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 UPF2Q9HAU5 1272 aaKnown RBP16.7■□□□□ 0.26
VRK3-206ENST00000594090 STARD7Q9NQZ5 370 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 DDX41Q9UJV9 622 aaKnown RBP16.7■□□□□ 0.26
VRK3-206ENST00000594090 PCDHA6Q9UN73 950 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 PCDHA8Q9Y5H6 950 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 H0YGN5 161 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 ZEB2O60315 1214 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 LARGE1O95461 756 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 CLK2P49760 499 aaKnown RBP16.7■□□□□ 0.26
VRK3-206ENST00000594090 ARHGAP1Q07960 439 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 ME3Q16798 604 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 C1orf53Q5VUE5 145 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 XRRA1Q6P2D8 792 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 KCNV1Q6PIU1 500 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 GLT1D1Q96MS3 346 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 INPP4AQ96PE3 977 aaPredicted RBP16.7■□□□□ 0.26
VRK3-206ENST00000594090 EHMT1Q9H9B1 1298 aa16.7■□□□□ 0.26
VRK3-206ENST00000594090 CDKL5O76039 1030 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 DEXIO95424 95 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 GH1P01241 217 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 AP3B2Q13367 1082 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 GNPTABQ3T906 1256 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 TRIM60Q495X7 471 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 CXCL17Q6UXB2 119 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 CCDC148Q8NFR7 591 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 PGBD1Q96JS3 809 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 ANO3Q9BYT9 981 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 C6orf50Q9HD87 102 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 TMEM260Q9NX78 707 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 VPS54Q9P1Q0 977 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 ATP11BQ9Y2G3 1177 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 ELP1O95163 1332 aa16.69■□□□□ 0.26
VRK3-206ENST00000594090 FOSP01100 380 aaPredicted RBP16.68■□□□□ 0.26
VRK3-206ENST00000594090 NECAB1Q8N987 351 aa16.68■□□□□ 0.26
VRK3-206ENST00000594090 GTF3C6Q969F1 213 aa16.68■□□□□ 0.26
VRK3-206ENST00000594090 SH3GLB2Q9NR46 395 aa16.68■□□□□ 0.26
VRK3-206ENST00000594090 POLR3EQ9NVU0 708 aa16.68■□□□□ 0.26
VRK3-206ENST00000594090 RTEL1Q9NZ71 1219 aa16.68■□□□□ 0.26
VRK3-206ENST00000594090 STK36Q9NRP7 1315 aa16.68■□□□□ 0.26
VRK3-206ENST00000594090 A0A0U1RQG5 324 aaPredicted RBP16.67■□□□□ 0.26
VRK3-206ENST00000594090 A6NJR5 290 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 ADAMTS3O15072 1205 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 FIBPO43427 364 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 CABYRO75952 493 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 CTDNEP1O95476 244 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 TGFB3P10600 412 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 UBA1P22314 1058 aaKnown RBP16.67■□□□□ 0.26
VRK3-206ENST00000594090 GNA11P29992 359 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 ICAM3P32942 547 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 BRDTQ58F21 947 aaPredicted RBP16.67■□□□□ 0.26
VRK3-206ENST00000594090 AFG1LQ8WV93 481 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 EMID1Q96A84 441 aaPredicted RBP16.67■□□□□ 0.26
VRK3-206ENST00000594090 VTI1AQ96AJ9 217 aa16.67■□□□□ 0.26
VRK3-206ENST00000594090 ZMYND8Q9ULU4 1186 aaPredicted RBP16.67■□□□□ 0.26
VRK3-206ENST00000594090 MYL3P08590 195 aa16.66■□□□□ 0.26
VRK3-206ENST00000594090 PURAQ00577 322 aaKnown RBP16.66■□□□□ 0.26
VRK3-206ENST00000594090 SP2Q02086 613 aa16.66■□□□□ 0.26
VRK3-206ENST00000594090 SEMA3FQ13275 785 aa16.66■□□□□ 0.26
VRK3-206ENST00000594090 LAMC2Q13753 1193 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms