RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 MTF1Q14872 753 aa22.02■■□□□ 1.11
CLIP3-206ENST00000593074 ZNF507Q8TCN5 953 aa22.02■■□□□ 1.11
CLIP3-206ENST00000593074 ERO1AQ96HE7 468 aa22.02■■□□□ 1.11
CLIP3-206ENST00000593074 LRRC27Q9C0I9 530 aa22.02■■□□□ 1.11
CLIP3-206ENST00000593074 DNAI1Q9UI46 699 aa22.02■■□□□ 1.11
CLIP3-206ENST00000593074 FANCGO15287 622 aa22.01■■□□□ 1.11
CLIP3-206ENST00000593074 SLU7O95391 586 aaKnown RBP22.01■■□□□ 1.11
CLIP3-206ENST00000593074 TNIP1Q15025 636 aa22.01■■□□□ 1.11
CLIP3-206ENST00000593074 RAD9BQ6WBX8 426 aa22.01■■□□□ 1.11
CLIP3-206ENST00000593074 KCNK18Q7Z418 384 aa22.01■■□□□ 1.11
CLIP3-206ENST00000593074 ZBED3Q96IU2 234 aaPredicted RBP22.01■■□□□ 1.11
CLIP3-206ENST00000593074 TMEM39BQ9GZU3 492 aa22.01■■□□□ 1.11
CLIP3-206ENST00000593074 MAGEC2Q9UBF1 373 aaPredicted RBP22.01■■□□□ 1.11
CLIP3-206ENST00000593074 PCDHA12Q9UN75 941 aa22.01■■□□□ 1.11
CLIP3-206ENST00000593074 SLC26A4O43511 780 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 CCDC175P0C221 793 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 MMP14P50281 582 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 ANKRD40Q6AI12 368 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 FBXO11Q86XK2 927 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 MB21D1Q8N884 522 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 DESI2Q9BSY9 194 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 ABHD10Q9NUJ1 306 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 KDM3AQ9Y4C1 1321 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 CREBRFQ8IUR6 639 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 TMX2Q9Y320 296 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 ADGRG1Q9Y653 693 aa22■■□□□ 1.11
CLIP3-206ENST00000593074 WNT10BO00744 389 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 EHHADHQ08426 723 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 ECM1Q16610 540 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 FAM114A1Q8IWE2 563 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 MYOZ2Q9NPC6 264 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 ZBTB21Q9ULJ3 1066 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 ECE1P42892 770 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 SNAP25P60880 206 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 NBPF9Q3BBW0 867 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 CENPPQ6IPU0 288 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 SPICE1Q8N0Z3 855 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 GJA10Q969M2 543 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 P2RX7Q99572 595 aaKnown RBP21.99■■□□□ 1.11
CLIP3-206ENST00000593074 NT5C3AQ9H0P0 336 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 GOPCQ9HD26 462 aa21.99■■□□□ 1.11
CLIP3-206ENST00000593074 RNF225M0QZC1 329 aaPredicted RBP21.98■■□□□ 1.11
CLIP3-206ENST00000593074 MARCH6O60337 910 aa21.98■■□□□ 1.11
CLIP3-206ENST00000593074 ARHGAP4P98171 946 aa21.98■■□□□ 1.11
CLIP3-206ENST00000593074 NAA30Q147X3 362 aaPredicted RBP21.98■■□□□ 1.11
CLIP3-206ENST00000593074 MIGA2Q7L4E1 593 aa21.98■■□□□ 1.11
CLIP3-206ENST00000593074 ACER1Q8TDN7 264 aa21.98■■□□□ 1.11
CLIP3-206ENST00000593074 DDX12PQ92771 950 aa21.98■■□□□ 1.11
CLIP3-206ENST00000593074 HPS3Q969F9 1004 aa21.98■■□□□ 1.11
CLIP3-206ENST00000593074 TUBGCP2Q9BSJ2 902 aa21.98■■□□□ 1.11
CLIP3-206ENST00000593074 SLC39A2Q9NP94 309 aa21.98■■□□□ 1.11
CLIP3-206ENST00000593074 NFKBIEO00221 500 aa21.97■■□□□ 1.11
CLIP3-206ENST00000593074 DNM2P50570 870 aa21.97■■□□□ 1.11
CLIP3-206ENST00000593074 DYMQ7RTS9 669 aa21.97■■□□□ 1.11
CLIP3-206ENST00000593074 TMTC1Q8IUR5 882 aa21.97■■□□□ 1.11
CLIP3-206ENST00000593074 SLFN12Q8IYM2 578 aa21.97■■□□□ 1.11
CLIP3-206ENST00000593074 GUF1Q8N442 669 aaKnown RBP21.97■■□□□ 1.11
CLIP3-206ENST00000593074 CNOT6LQ96LI5 555 aaKnown RBP21.97■■□□□ 1.11
CLIP3-206ENST00000593074 SEMA6BQ9H3T3 888 aa21.97■■□□□ 1.11
CLIP3-206ENST00000593074 MRPL44Q9H9J2 332 aaKnown RBP21.97■■□□□ 1.11
CLIP3-206ENST00000593074 FOSP01100 380 aaPredicted RBP21.97■■□□□ 1.11
CLIP3-206ENST00000593074 SREBF1P36956 1147 aa21.97■■□□□ 1.11
CLIP3-206ENST00000593074 PSMD2Q13200 908 aa21.97■■□□□ 1.11
CLIP3-206ENST00000593074 CDAN1Q8IWY9 1227 aa21.97■■□□□ 1.11
CLIP3-206ENST00000593074 OPLAHO14841 1288 aa21.96■■□□□ 1.11
CLIP3-206ENST00000593074 ERVK-24P63145 666 aa21.96■■□□□ 1.11
CLIP3-206ENST00000593074 USH1GQ495M9 461 aa21.96■■□□□ 1.11
CLIP3-206ENST00000593074 Q4G0T1 1027 aa21.96■■□□□ 1.11
CLIP3-206ENST00000593074 PDCL2Q8N4E4 241 aa21.96■■□□□ 1.11
CLIP3-206ENST00000593074 ETNPPLQ8TBG4 499 aa21.96■■□□□ 1.11
CLIP3-206ENST00000593074 PGAP2Q9UHJ9 254 aa21.96■■□□□ 1.11
CLIP3-206ENST00000593074 PRR12Q9ULL5 1215 aa21.96■■□□□ 1.11
CLIP3-206ENST00000593074 BCS1LQ9Y276 419 aa21.96■■□□□ 1.11
CLIP3-206ENST00000593074 TBX3O15119 743 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 KRT9P35527 623 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 CAP2P40123 477 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 STAT2P52630 851 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 FOXR2Q6PJQ5 311 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 CYP26C1Q6V0L0 522 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 TEX2Q8IWB9 1127 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 DNAJC19Q96DA6 116 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 WDR24Q96S15 920 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 CD2APQ9Y5K6 639 aa21.95■■□□□ 1.11
CLIP3-206ENST00000593074 B4DLN1 442 aa21.95■■□□□ 1.1
CLIP3-206ENST00000593074 PRKCSHP14314 528 aaPredicted RBP21.95■■□□□ 1.1
CLIP3-206ENST00000593074 RPS12P25398 132 aaKnown RBP21.95■■□□□ 1.1
CLIP3-206ENST00000593074 GNG11P61952 73 aa21.95■■□□□ 1.1
CLIP3-206ENST00000593074 MAP3K10Q02779 954 aa21.95■■□□□ 1.1
CLIP3-206ENST00000593074 LENG9Q96B70 501 aa21.95■■□□□ 1.1
CLIP3-206ENST00000593074 DNAJC7Q99615 494 aa21.95■■□□□ 1.1
CLIP3-206ENST00000593074 TTC26A0AVF1 554 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 SHTN1A0MZ66 631 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 SPDYE3A6NKU9 549 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 PIK3CDO00329 1044 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 SPIRE1Q08AE8 756 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 TRAF1Q13077 416 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 R3HDM1Q15032 1099 aaKnown RBP21.94■■□□□ 1.1
CLIP3-206ENST00000593074 MIIPQ5JXC2 388 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 KIAA1755Q5JYT7 1200 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 KIFC2Q96AC6 838 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms