RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 AMOTL1Q8IY63 956 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 MMGT1Q8N4V1 131 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 PNMA1Q8ND90 353 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 NLGN2Q8NFZ4 835 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 CCDC42Q96M95 316 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 DBNDD1Q9H9R9 158 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 TCP11L1Q9NUJ3 509 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 FAM184BQ9ULE4 1060 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 SNX12Q9UMY4 172 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 SUGT1Q9Y2Z0 365 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 JRKLQ9Y4A0 524 aa12.05□□□□□ -0.48
VPS4B-206ENST00000591475 ECE2O60344 883 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 PLCG1P19174 1290 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 CORO7P57737 925 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 GSTO1P78417 241 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 TFAP4Q01664 338 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 CYP27A1Q02318 531 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 ITIH3Q06033 890 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 CCDC96Q2M329 555 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 CCDC178Q5BJE1 867 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 ZSCAN29Q8IWY8 852 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-206ENST00000591475 GSPT2Q8IYD1 628 aaKnown RBP12.04□□□□□ -0.48
VPS4B-206ENST00000591475 PIAS4Q8N2W9 510 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-206ENST00000591475 FAM76AQ8TAV0 307 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 AENQ8WTP8 325 aaKnown RBP12.04□□□□□ -0.48
VPS4B-206ENST00000591475 ANKS1AQ92625 1134 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 GDAP1L1Q96MZ0 367 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 C7orf25Q9BPX7 421 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 LRWD1Q9UFC0 647 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 DUSP10Q9Y6W6 482 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 FLT1P17948 1338 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 GOLGA6BA6NDN3 693 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 SHOX2O60902 331 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-206ENST00000591475 MYBL2P10244 700 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 PRLRP16471 622 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 ASIC1P78348 528 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 AMPD3Q01432 767 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 MIIPQ5JXC2 388 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 STRIP1Q5VSL9 837 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 TYW1BQ6NUM6 668 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 ZNF572Q7Z3I7 529 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-206ENST00000591475 HEATR3Q7Z4Q2 680 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 STAG2Q8N3U4 1231 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 RIN2Q8WYP3 895 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-206ENST00000591475 TRIM9Q9C026 710 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 FHDC1Q9C0D6 1143 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-206ENST00000591475 TAOK3Q9H2K8 898 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 BARHL2Q9NY43 387 aa12.04□□□□□ -0.48
VPS4B-206ENST00000591475 GOLGA6CA6NDK9 693 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 AGPSO00116 658 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 STXBP3O00186 592 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 OR52Z1P0C646 297 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 GOLGA6DP0CG33 693 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 HNRNPH3P31942 346 aaKnown RBP12.03□□□□□ -0.48
VPS4B-206ENST00000591475 COBLL1Q53SF7 1204 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 DNAJC21Q5F1R6 531 aaKnown RBP12.03□□□□□ -0.48
VPS4B-206ENST00000591475 CNNM4Q6P4Q7 775 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 CREG2Q8IUH2 290 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 SLF2Q8IX21 1173 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 LARGE2Q8N3Y3 721 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 LRRC15Q8TF66 581 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 PPM1EQ8WY54 764 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 SH2D4AQ9H788 454 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 MCM9Q9NXL9 1143 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 GOLGA6AQ9NYA3 693 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 MAD2L2Q9UI95 211 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 BRCA1P38398 1863 aaKnown RBP12.03□□□□□ -0.48
VPS4B-206ENST00000591475 ZNF263O14978 683 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 LDHCP07864 332 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 FKBP1AP62942 108 aaKnown RBP12.03□□□□□ -0.48
VPS4B-206ENST00000591475 STK4Q13043 487 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 TTC31Q49AM3 519 aaPredicted RBP12.03□□□□□ -0.48
VPS4B-206ENST00000591475 EEF2KMTQ96G04 330 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 IFIH1Q9BYX4 1025 aaKnown RBP12.03□□□□□ -0.48
VPS4B-206ENST00000591475 FAM107BQ9H098 131 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 ZNF277Q9NRM2 450 aaPredicted RBP12.03□□□□□ -0.48
VPS4B-206ENST00000591475 IL17RBQ9NRM6 502 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 PLAGL2Q9UPG8 496 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 PCDHA13Q9Y5I0 950 aa12.03□□□□□ -0.48
VPS4B-206ENST00000591475 MYH10P35580 1976 aa12.02□□□□□ -0.48
VPS4B-206ENST00000591475 NAV1Q8NEY1 1877 aa12.02□□□□□ -0.48
VPS4B-206ENST00000591475 USP17L3A6NCW0 530 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 USP17L4A6NCW7 530 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 GOLGA8KD6RF30 607 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 LCA5LO95447 670 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 TCP1P17987 556 aaKnown RBP12.02□□□□□ -0.49
VPS4B-206ENST00000591475 PPFIA1Q13136 1202 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 VWA3BQ502W6 1294 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 SND1Q7KZF4 910 aaKnown RBP eCLIP12.02□□□□□ -0.49
VPS4B-206ENST00000591475 USP17L1Q7RTZ2 530 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 KRT26Q7Z3Y9 468 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 KRT25Q7Z3Z0 450 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 ALS2CR12Q96Q35 445 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 LZTS2Q9BRK4 669 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 PLEKHA4Q9H4M7 779 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 HYOU1Q9Y4L1 999 aa12.02□□□□□ -0.49
VPS4B-206ENST00000591475 LTBP3Q9NS15 1303 aa12.01□□□□□ -0.49
VPS4B-206ENST00000591475 OPA1O60313 960 aa12.01□□□□□ -0.49
VPS4B-206ENST00000591475 BAG3O95817 575 aa12.01□□□□□ -0.49
VPS4B-206ENST00000591475 USP17L8P0C7I0 530 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms