RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 PIK3CDO00329 1044 aa17.53■□□□□ 0.4
CLIP3-202ENST00000585466 AGXT2Q9BYV1 514 aa17.53■□□□□ 0.4
CLIP3-202ENST00000585466 NID2Q14112 1375 aa17.53■□□□□ 0.4
CLIP3-202ENST00000585466 DOCK5Q9H7D0 1870 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 ZEB2O60315 1214 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 CDC27P30260 824 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 CPT1AP50416 773 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 MRPS9P82933 396 aaKnown RBP17.52■□□□□ 0.4
CLIP3-202ENST00000585466 SHHQ15465 462 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 TYW1BQ6NUM6 668 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 USP17L6PQ6QN14 398 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 FCHSD1Q86WN1 690 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 FBXL16Q8N461 479 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 AFG1LQ8WV93 481 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 GPKOWQ92917 476 aaPredicted RBP eCLIP17.52■□□□□ 0.4
CLIP3-202ENST00000585466 EMID1Q96A84 441 aaPredicted RBP17.52■□□□□ 0.4
CLIP3-202ENST00000585466 VTI1AQ96AJ9 217 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 ZFP91Q96JP5 570 aaPredicted RBP17.52■□□□□ 0.4
CLIP3-202ENST00000585466 JAKMIP1Q96N16 626 aaKnown RBP17.52■□□□□ 0.4
CLIP3-202ENST00000585466 POLR3EQ9NVU0 708 aa17.52■□□□□ 0.4
CLIP3-202ENST00000585466 EPB41L2O43491 1005 aaKnown RBP17.51■□□□□ 0.39
CLIP3-202ENST00000585466 B4GALT4O60513 344 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 REC8O95072 547 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 TIMP1P01033 207 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 GH1P01241 217 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 MMP3P08254 477 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 HMGB1P09429 215 aaKnown RBP17.51■□□□□ 0.39
CLIP3-202ENST00000585466 RCAN1P53805 252 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 SEMA3FQ13275 785 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 CCDC82Q8N4S0 544 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 KAT2BQ92831 832 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 MTG1Q9BT17 334 aaPredicted RBP17.51■□□□□ 0.39
CLIP3-202ENST00000585466 USP26Q9BXU7 913 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 TRPV6Q9H1D0 765 aa17.51■□□□□ 0.39
CLIP3-202ENST00000585466 KLF18A0A0U1RQI7 1052 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 ZBTB43O43298 467 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 MYL3P08590 195 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 MYCLP12524 364 aaPredicted RBP17.5■□□□□ 0.39
CLIP3-202ENST00000585466 HOXD8P13378 290 aaPredicted RBP17.5■□□□□ 0.39
CLIP3-202ENST00000585466 RAG1P15918 1043 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 RPS6KB1P23443 525 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 SP2Q02086 613 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 RTN1Q16799 776 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 PPP1R13LQ8WUF5 828 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 VWCEQ96DN2 955 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 INPP4AQ96PE3 977 aaPredicted RBP17.5■□□□□ 0.39
CLIP3-202ENST00000585466 SEZ6LQ9BYH1 1024 aa17.5■□□□□ 0.39
CLIP3-202ENST00000585466 ALDH8A1Q9H2A2 487 aaPredicted RBP17.5■□□□□ 0.39
CLIP3-202ENST00000585466 RBM28Q9NW13 759 aaKnown RBP17.5■□□□□ 0.39
CLIP3-202ENST00000585466 SEC63Q9UGP8 760 aaKnown RBP17.5■□□□□ 0.39
CLIP3-202ENST00000585466 UMODL1Q5DID0 1318 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 UBA1P22314 1058 aaKnown RBP17.49■□□□□ 0.39
CLIP3-202ENST00000585466 CCND2P30279 289 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 APOBRQ0VD83 1088 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 NBPF20Q3BBV1 942 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 WWC2Q6AWC2 1192 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 Q6ZUG5 572 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 C16orf59Q7L2K0 433 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 CTAGE1Q96RT6 745 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 NOC4LQ9BVI4 516 aaKnown RBP17.49■□□□□ 0.39
CLIP3-202ENST00000585466 BCAS3Q9H6U6 928 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 MRVI1Q9Y6F6 885 aa17.49■□□□□ 0.39
CLIP3-202ENST00000585466 GOLGA8AA7E2F4 631 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 GOLGA8BA8MQT2 603 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 KPNA6O60684 536 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 ICAM3P32942 547 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 FPGSQ05932 587 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 MYSM1Q5VVJ2 828 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 MFSD5Q6N075 450 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 GPR153Q6NV75 609 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 BLOC1S2Q6QNY1 142 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 BRF1Q92994 677 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 TRMT13Q9NUP7 481 aaKnown RBP17.48■□□□□ 0.39
CLIP3-202ENST00000585466 TANC1Q9C0D5 1861 aa17.48■□□□□ 0.39
CLIP3-202ENST00000585466 SCN5AQ14524 2016 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 TLR3O15455 904 aaKnown RBP17.47■□□□□ 0.39
CLIP3-202ENST00000585466 CYP2C18P33260 490 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 EVCP57679 992 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 UBE2SQ16763 222 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 CELF3Q5SZQ8 465 aaKnown RBP17.47■□□□□ 0.39
CLIP3-202ENST00000585466 PCNX4Q63HM2 1172 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 NFRKBQ6P4R8 1299 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 SYNE3Q6ZMZ3 975 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 PPTC7Q8NI37 304 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 PPP1R12CQ9BZL4 782 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 WNT8AQ9H1J5 351 aa17.47■□□□□ 0.39
CLIP3-202ENST00000585466 SPATA31C2B4DYI2 1134 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 STXBP3O00186 592 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 TGFB3P10600 412 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 CSF2RAP15509 400 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 CASTP20810 708 aaKnown RBP17.46■□□□□ 0.39
CLIP3-202ENST00000585466 ADD1P35611 737 aaKnown RBP17.46■□□□□ 0.39
CLIP3-202ENST00000585466 LAMC2Q13753 1193 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 TOB2Q14106 344 aaPredicted RBP17.46■□□□□ 0.39
CLIP3-202ENST00000585466 HSDL1Q3SXM5 330 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 BRDTQ58F21 947 aaPredicted RBP17.46■□□□□ 0.39
CLIP3-202ENST00000585466 HEATR3Q7Z4Q2 680 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 SMARCC2Q8TAQ2 1214 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 PSTPIP2Q9H939 334 aa17.46■□□□□ 0.39
CLIP3-202ENST00000585466 ZSWIM6Q9HCJ5 1215 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms