RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 GPR37L1O60883 481 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 GH1P01241 217 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 CKBP12277 381 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 TMEM31Q5JXX7 168 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 CNKSR3Q6P9H4 555 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 ZNF589Q86UQ0 364 aaPredicted RBP25.56■■□□□ 1.68
SHMT1-210ENST00000583780 CCDC155Q8N6L0 562 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 GDPD5Q8WTR4 605 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 MAF1Q9H063 256 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 HDAC6Q9UBN7 1215 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 GTF2IRD1Q9UHL9 959 aa25.56■■□□□ 1.68
SHMT1-210ENST00000583780 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.55■■□□□ 1.68
SHMT1-210ENST00000583780 GJB5O95377 273 aa25.55■■□□□ 1.68
SHMT1-210ENST00000583780 CASTP20810 708 aaKnown RBP25.55■■□□□ 1.68
SHMT1-210ENST00000583780 ERVK-21P61565 698 aa25.55■■□□□ 1.68
SHMT1-210ENST00000583780 TRAF7Q6Q0C0 670 aa25.55■■□□□ 1.68
SHMT1-210ENST00000583780 RAD9AQ99638 391 aa25.55■■□□□ 1.68
SHMT1-210ENST00000583780 ZBED2Q9BTP6 218 aa25.55■■□□□ 1.68
SHMT1-210ENST00000583780 DDX41Q9UJV9 622 aaKnown RBP25.55■■□□□ 1.68
SHMT1-210ENST00000583780 ZMYM6O95789 1325 aa25.55■■□□□ 1.68
SHMT1-210ENST00000583780 MYH6P13533 1939 aa25.55■■□□□ 1.68
SHMT1-210ENST00000583780 SIP14410 1827 aa25.54■■□□□ 1.68
SHMT1-210ENST00000583780 PARNO95453 639 aaKnown RBP25.54■■□□□ 1.68
SHMT1-210ENST00000583780 TRIM71Q2Q1W2 868 aaKnown RBP25.54■■□□□ 1.68
SHMT1-210ENST00000583780 GPATCH4Q5T3I0 446 aaKnown RBP25.54■■□□□ 1.68
SHMT1-210ENST00000583780 MFSD6Q6ZSS7 791 aa25.54■■□□□ 1.68
SHMT1-210ENST00000583780 CHST3Q7LGC8 479 aa25.54■■□□□ 1.68
SHMT1-210ENST00000583780 TBC1D10CQ8IV04 446 aa25.54■■□□□ 1.68
SHMT1-210ENST00000583780 NSUN6Q8TEA1 469 aaKnown RBP25.54■■□□□ 1.68
SHMT1-210ENST00000583780 ZKSCAN3Q9BRR0 538 aa25.54■■□□□ 1.68
SHMT1-210ENST00000583780 ABHD14A-ACY1A0A1B0GW23 586 aa25.53■■□□□ 1.68
SHMT1-210ENST00000583780 PI4K2BG5E9Z4 385 aa25.53■■□□□ 1.68
SHMT1-210ENST00000583780 PDE1AP54750 535 aa25.53■■□□□ 1.68
SHMT1-210ENST00000583780 MBTPS1Q14703 1052 aa25.53■■□□□ 1.68
SHMT1-210ENST00000583780 ANKRD45Q5TZF3 282 aa25.53■■□□□ 1.68
SHMT1-210ENST00000583780 WNT8BQ93098 351 aa25.53■■□□□ 1.68
SHMT1-210ENST00000583780 IWS1Q96ST2 819 aa25.53■■□□□ 1.68
SHMT1-210ENST00000583780 LINC01553A4QN01 128 aa25.52■■□□□ 1.68
SHMT1-210ENST00000583780 HAS3O00219 553 aa25.52■■□□□ 1.68
SHMT1-210ENST00000583780 PCP11498 1178 aaKnown RBP25.52■■□□□ 1.68
SHMT1-210ENST00000583780 STXBP2Q15833 593 aa25.52■■□□□ 1.68
SHMT1-210ENST00000583780 DGKHQ86XP1 1220 aa25.52■■□□□ 1.68
SHMT1-210ENST00000583780 TGS1Q96RS0 853 aaKnown RBP25.52■■□□□ 1.68
SHMT1-210ENST00000583780 MTUS1Q9ULD2 1270 aa25.52■■□□□ 1.68
SHMT1-210ENST00000583780 PSEN2P49810 448 aa25.51■■□□□ 1.67
SHMT1-210ENST00000583780 NMIQ13287 307 aaPredicted RBP25.51■■□□□ 1.67
SHMT1-210ENST00000583780 HIC1Q14526 733 aa25.51■■□□□ 1.67
SHMT1-210ENST00000583780 CDC37Q16543 378 aaPredicted RBP25.51■■□□□ 1.67
SHMT1-210ENST00000583780 DGKDQ16760 1214 aa25.51■■□□□ 1.67
SHMT1-210ENST00000583780 ADGRF4Q8IZF3 695 aa25.51■■□□□ 1.67
SHMT1-210ENST00000583780 EMID1Q96A84 441 aaPredicted RBP25.51■■□□□ 1.67
SHMT1-210ENST00000583780 RMDN3Q96TC7 470 aa25.51■■□□□ 1.67
SHMT1-210ENST00000583780 ALG1Q9BT22 464 aa25.51■■□□□ 1.67
SHMT1-210ENST00000583780 ABCB11O95342 1321 aa25.51■■□□□ 1.67
SHMT1-210ENST00000583780 ZNF200P98182 395 aaPredicted RBP25.5■■□□□ 1.67
SHMT1-210ENST00000583780 PTK7Q13308 1070 aa25.5■■□□□ 1.67
SHMT1-210ENST00000583780 ZNF618Q5T7W0 954 aa25.5■■□□□ 1.67
SHMT1-210ENST00000583780 TICAM2Q86XR7 235 aa25.5■■□□□ 1.67
SHMT1-210ENST00000583780 C7orf31Q8N865 590 aa25.5■■□□□ 1.67
SHMT1-210ENST00000583780 ANKS1AQ92625 1134 aa25.5■■□□□ 1.67
SHMT1-210ENST00000583780 HCN4Q9Y3Q4 1203 aa25.5■■□□□ 1.67
SHMT1-210ENST00000583780 NEDD4P46934 1319 aa25.49■■□□□ 1.67
SHMT1-210ENST00000583780 FAM86C2PA6NEL3 165 aa25.49■■□□□ 1.67
SHMT1-210ENST00000583780 MKRN4PQ13434 485 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-210ENST00000583780 IKBKEQ14164 716 aa25.49■■□□□ 1.67
SHMT1-210ENST00000583780 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.49■■□□□ 1.67
SHMT1-210ENST00000583780 GADD45GIP1Q8TAE8 222 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-210ENST00000583780 UBE2ZQ9H832 354 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-210ENST00000583780 MICAL3Q7RTP6 2002 aa25.48■■□□□ 1.67
SHMT1-210ENST00000583780 EIF3JO75822 258 aaKnown RBP25.48■■□□□ 1.67
SHMT1-210ENST00000583780 F2P00734 622 aa25.48■■□□□ 1.67
SHMT1-210ENST00000583780 RRP1P56182 461 aaKnown RBP25.48■■□□□ 1.67
SHMT1-210ENST00000583780 MFSD10Q14728 455 aa25.48■■□□□ 1.67
SHMT1-210ENST00000583780 KIAA0753Q2KHM9 967 aa25.48■■□□□ 1.67
SHMT1-210ENST00000583780 QRICH1Q2TAL8 776 aa25.48■■□□□ 1.67
SHMT1-210ENST00000583780 FAM117BQ6P1L5 589 aa25.48■■□□□ 1.67
SHMT1-210ENST00000583780 FAM178BQ8IXR5 827 aa25.48■■□□□ 1.67
SHMT1-210ENST00000583780 PNMA1Q8ND90 353 aa25.48■■□□□ 1.67
SHMT1-210ENST00000583780 MUC6Q6W4X9 2439 aa25.47■■□□□ 1.67
SHMT1-210ENST00000583780 CCDC171Q6TFL3 1326 aa25.47■■□□□ 1.67
SHMT1-210ENST00000583780 NR3C2P08235 984 aa25.47■■□□□ 1.67
SHMT1-210ENST00000583780 HOXD8P13378 290 aaPredicted RBP25.47■■□□□ 1.67
SHMT1-210ENST00000583780 LAMC2Q13753 1193 aa25.47■■□□□ 1.67
SHMT1-210ENST00000583780 LEXMQ3ZCV2 418 aa25.47■■□□□ 1.67
SHMT1-210ENST00000583780 MCF2L2Q86YR7 1114 aa25.47■■□□□ 1.67
SHMT1-210ENST00000583780 ESR2Q92731 530 aa25.47■■□□□ 1.67
SHMT1-210ENST00000583780 OPLAHO14841 1288 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 EFCAB14O75071 495 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 RGS20O76081 388 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 ZNF286BP0CG31 522 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 EIF2AK2P19525 551 aaKnown RBP25.46■■□□□ 1.67
SHMT1-210ENST00000583780 ARHGEF16Q5VV41 709 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 PPTC7Q8NI37 304 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 C17orf80Q9BSJ5 609 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 KATNAL1Q9BW62 490 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 RNF41Q9H4P4 317 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-210ENST00000583780 JMJD4Q9H9V9 463 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 PXMP2Q9NR77 195 aa25.46■■□□□ 1.67
SHMT1-210ENST00000583780 PPFIA4O75335 1185 aa25.45■■□□□ 1.66
SHMT1-210ENST00000583780 LGR5O75473 907 aa25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms