RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 CCDC62Q6P9F0 684 aa17.9■□□□□ 0.46
SF3B3-215ENST00000577085 DHX32Q7L7V1 743 aaKnown RBP17.9■□□□□ 0.46
SF3B3-215ENST00000577085 CMTR1Q8N1G2 835 aaKnown RBP17.9■□□□□ 0.46
SF3B3-215ENST00000577085 CCDC82Q8N4S0 544 aa17.9■□□□□ 0.46
SF3B3-215ENST00000577085 FANCBQ8NB91 859 aa17.9■□□□□ 0.46
SF3B3-215ENST00000577085 AFG1LQ8WV93 481 aa17.9■□□□□ 0.46
SF3B3-215ENST00000577085 ALDH8A1Q9H2A2 487 aaPredicted RBP17.9■□□□□ 0.46
SF3B3-215ENST00000577085 NOD1Q9Y239 953 aa17.9■□□□□ 0.46
SF3B3-215ENST00000577085 GRIN2DO15399 1336 aa17.9■□□□□ 0.46
SF3B3-215ENST00000577085 REC8O95072 547 aa17.89■□□□□ 0.45
SF3B3-215ENST00000577085 CSF2RAP15509 400 aa17.89■□□□□ 0.45
SF3B3-215ENST00000577085 CASTP20810 708 aaKnown RBP17.89■□□□□ 0.45
SF3B3-215ENST00000577085 CYP2C18P33260 490 aa17.89■□□□□ 0.45
SF3B3-215ENST00000577085 EPHB4P54760 987 aa17.89■□□□□ 0.45
SF3B3-215ENST00000577085 LAMC2Q13753 1193 aa17.89■□□□□ 0.45
SF3B3-215ENST00000577085 DGKDQ16760 1214 aa17.89■□□□□ 0.45
SF3B3-215ENST00000577085 NBPF20Q3BBV1 942 aa17.89■□□□□ 0.45
SF3B3-215ENST00000577085 Q7L0L9 218 aa17.89■□□□□ 0.45
SF3B3-215ENST00000577085 SGMS1Q86VZ5 419 aa17.89■□□□□ 0.45
SF3B3-215ENST00000577085 DHX37Q8IY37 1157 aaKnown RBP17.89■□□□□ 0.45
SF3B3-215ENST00000577085 SRBD1Q8N5C6 995 aaKnown RBP17.89■□□□□ 0.45
SF3B3-215ENST00000577085 DDX41Q9UJV9 622 aaKnown RBP17.89■□□□□ 0.45
SF3B3-215ENST00000577085 NAP1L2Q9ULW6 460 aaPredicted RBP17.89■□□□□ 0.45
SF3B3-215ENST00000577085 MMP3P08254 477 aa17.88■□□□□ 0.45
SF3B3-215ENST00000577085 ARHGAP1Q07960 439 aa17.88■□□□□ 0.45
SF3B3-215ENST00000577085 GNPTABQ3T906 1256 aa17.88■□□□□ 0.45
SF3B3-215ENST00000577085 ZNF697Q5TEC3 545 aa17.88■□□□□ 0.45
SF3B3-215ENST00000577085 NFRKBQ6P4R8 1299 aa17.88■□□□□ 0.45
SF3B3-215ENST00000577085 VSIG10LQ86VR7 867 aa17.88■□□□□ 0.45
SF3B3-215ENST00000577085 TRMT13Q9NUP7 481 aaKnown RBP17.88■□□□□ 0.45
SF3B3-215ENST00000577085 RBM28Q9NW13 759 aaKnown RBP17.88■□□□□ 0.45
SF3B3-215ENST00000577085 ZBTB43O43298 467 aa17.87■□□□□ 0.45
SF3B3-215ENST00000577085 TSGA10IPQ3SY00 556 aa17.87■□□□□ 0.45
SF3B3-215ENST00000577085 PSRC1Q6PGN9 363 aaPredicted RBP17.87■□□□□ 0.45
SF3B3-215ENST00000577085 TMTC3Q6ZXV5 915 aa17.87■□□□□ 0.45
SF3B3-215ENST00000577085 HEATR3Q7Z4Q2 680 aa17.87■□□□□ 0.45
SF3B3-215ENST00000577085 RASEFQ8IZ41 740 aa17.87■□□□□ 0.45
SF3B3-215ENST00000577085 TCEANC2Q96MN5 208 aa17.87■□□□□ 0.45
SF3B3-215ENST00000577085 KATNAL1Q9BW62 490 aa17.87■□□□□ 0.45
SF3B3-215ENST00000577085 MTIF3Q9H2K0 278 aaKnown RBP17.87■□□□□ 0.45
SF3B3-215ENST00000577085 PSTPIP2Q9H939 334 aa17.87■□□□□ 0.45
SF3B3-215ENST00000577085 STAM2O75886 525 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 ACRP10323 421 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 TGFB3P10600 412 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 CCL23P55773 120 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 SMAD3P84022 425 aaKnown RBP17.86■□□□□ 0.45
SF3B3-215ENST00000577085 PTPN11Q06124 597 aaPredicted RBP17.86■□□□□ 0.45
SF3B3-215ENST00000577085 COL9A3Q14050 684 aaPredicted RBP17.86■□□□□ 0.45
SF3B3-215ENST00000577085 RTN1Q16799 776 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 ADCK5Q3MIX3 580 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 APOA5Q6Q788 366 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 IL31RAQ8NI17 732 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 PPTC7Q8NI37 304 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 EMID1Q96A84 441 aaPredicted RBP17.86■□□□□ 0.45
SF3B3-215ENST00000577085 SPATA33Q96N06 139 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.86■□□□□ 0.45
SF3B3-215ENST00000577085 NOC4LQ9BVI4 516 aaKnown RBP17.86■□□□□ 0.45
SF3B3-215ENST00000577085 MLXIPQ9HAP2 919 aa17.86■□□□□ 0.45
SF3B3-215ENST00000577085 KLF18A0A0U1RQI7 1052 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 hCG_1642624A0A1W2PR95 340 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 PIK3CDO00329 1044 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 SORBS3O60504 671 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 GGPS1O95749 300 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 CYP2C9P11712 490 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 EXOSC10Q01780 885 aaKnown RBP17.85■□□□□ 0.45
SF3B3-215ENST00000577085 FAM109BQ6ICB4 259 aaPredicted RBP17.85■□□□□ 0.45
SF3B3-215ENST00000577085 USP17L6PQ6QN14 398 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 RPUSD2Q8IZ73 545 aaKnown RBP17.85■□□□□ 0.45
SF3B3-215ENST00000577085 C7orf31Q8N865 590 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 RETREG2Q8NC44 543 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 ZFP91Q96JP5 570 aaPredicted RBP17.85■□□□□ 0.45
SF3B3-215ENST00000577085 FAM161BQ96MY7 647 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 JAKMIP1Q96N16 626 aaKnown RBP17.85■□□□□ 0.45
SF3B3-215ENST00000577085 IL23AQ9NPF7 189 aa17.85■□□□□ 0.45
SF3B3-215ENST00000577085 KIAA1217Q5T5P2 1943 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 UMODL1Q5DID0 1318 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 SPDYE3A6NKU9 549 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 GOLGA8AA7E2F4 631 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 GOLGA8BA8MQT2 603 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 NOP56O00567 594 aaKnown RBP17.84■□□□□ 0.45
SF3B3-215ENST00000577085 FGBP02675 491 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 BFSP2Q13515 415 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 CELF3Q5SZQ8 465 aaKnown RBP17.84■□□□□ 0.45
SF3B3-215ENST00000577085 BLOC1S2Q6QNY1 142 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 ZNF365Q70YC5 407 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 CCDC155Q8N6L0 562 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 PPP1R13LQ8WUF5 828 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 RTEL1Q9NZ71 1219 aa17.84■□□□□ 0.45
SF3B3-215ENST00000577085 BAZ2BQ9UIF8 2168 aaKnown RBP17.84■□□□□ 0.45
SF3B3-215ENST00000577085 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.83■□□□□ 0.44
SF3B3-215ENST00000577085 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.83■□□□□ 0.44
SF3B3-215ENST00000577085 RGS20O76081 388 aa17.83■□□□□ 0.44
SF3B3-215ENST00000577085 UBA1P22314 1058 aaKnown RBP17.83■□□□□ 0.44
SF3B3-215ENST00000577085 PSMA5P28066 241 aa17.83■□□□□ 0.44
SF3B3-215ENST00000577085 HSPA4P34932 840 aa17.83■□□□□ 0.44
SF3B3-215ENST00000577085 PTGISQ16647 500 aa17.83■□□□□ 0.44
SF3B3-215ENST00000577085 TMEM240Q5SV17 173 aa17.83■□□□□ 0.44
SF3B3-215ENST00000577085 MYSM1Q5VVJ2 828 aa17.83■□□□□ 0.44
SF3B3-215ENST00000577085 XRRA1Q6P2D8 792 aa17.83■□□□□ 0.44
SF3B3-215ENST00000577085 NLRX1Q86UT6 975 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms