RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CCDC105Q8IYK2 499 aa19.51■□□□□ 0.71
VPS53-218ENST00000575207 GPR108Q9NPR9 543 aa19.51■□□□□ 0.71
VPS53-218ENST00000575207 SALL2Q9Y467 1007 aaPredicted RBP19.51■□□□□ 0.71
VPS53-218ENST00000575207 MYO10Q9HD67 2058 aa19.51■□□□□ 0.71
VPS53-218ENST00000575207 MAGEB6P1A0A0J9YX57 407 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 UPP2O95045 317 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 ADRB1P08588 477 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 FDX1P10109 184 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 ATXN1P54253 815 aaKnown RBP19.5■□□□□ 0.71
VPS53-218ENST00000575207 PTK7Q13308 1070 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 PLEKHG4Q58EX7 1191 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 CYP2W1Q8TAV3 490 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 CLP1Q92989 425 aaKnown RBP19.5■□□□□ 0.71
VPS53-218ENST00000575207 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.5■□□□□ 0.71
VPS53-218ENST00000575207 SH2B1Q9NRF2 756 aaPredicted RBP19.5■□□□□ 0.71
VPS53-218ENST00000575207 CYP39A1Q9NYL5 469 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 GTF2IRD1Q9UHL9 959 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 FEM1BQ9UK73 627 aa19.5■□□□□ 0.71
VPS53-218ENST00000575207 DDX10Q13206 875 aaKnown RBP19.49■□□□□ 0.71
VPS53-218ENST00000575207 TKFCQ3LXA3 575 aa19.49■□□□□ 0.71
VPS53-218ENST00000575207 ADGRD2Q7Z7M1 963 aa19.49■□□□□ 0.71
VPS53-218ENST00000575207 SDR42E1Q8WUS8 393 aa19.49■□□□□ 0.71
VPS53-218ENST00000575207 IL17RAQ96F46 866 aa19.49■□□□□ 0.71
VPS53-218ENST00000575207 CHAMP1Q96JM3 812 aa19.49■□□□□ 0.71
VPS53-218ENST00000575207 FLNBO75369 2602 aaKnown RBP19.49■□□□□ 0.71
VPS53-218ENST00000575207 LOC102724159A0A0B4J2E5 919 aa19.48■□□□□ 0.71
VPS53-218ENST00000575207 CHMP4BP1P59074 171 aa19.48■□□□□ 0.71
VPS53-218ENST00000575207 PWP2Q15269 919 aaKnown RBP19.48■□□□□ 0.71
VPS53-218ENST00000575207 CWF19L1Q69YN2 538 aaKnown RBP19.48■□□□□ 0.71
VPS53-218ENST00000575207 C16orf86Q6ZW13 317 aa19.48■□□□□ 0.71
VPS53-218ENST00000575207 HINFPQ9BQA5 517 aa19.48■□□□□ 0.71
VPS53-218ENST00000575207 PLVAPQ9BX97 442 aa19.48■□□□□ 0.71
VPS53-218ENST00000575207 IFIH1Q9BYX4 1025 aaKnown RBP19.48■□□□□ 0.71
VPS53-218ENST00000575207 MFSD1Q9H3U5 465 aa19.48■□□□□ 0.71
VPS53-218ENST00000575207 PLAGL2Q9UPG8 496 aa19.48■□□□□ 0.71
VPS53-218ENST00000575207 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.47■□□□□ 0.71
VPS53-218ENST00000575207 AOC1P19801 751 aa19.47■□□□□ 0.71
VPS53-218ENST00000575207 G3BP1Q13283 466 aaKnown RBP eCLIP19.47■□□□□ 0.71
VPS53-218ENST00000575207 TNNI3KQ59H18 835 aa19.47■□□□□ 0.71
VPS53-218ENST00000575207 LRRC47Q8N1G4 583 aaKnown RBP19.47■□□□□ 0.71
VPS53-218ENST00000575207 DCLK2Q8N568 766 aa19.47■□□□□ 0.71
VPS53-218ENST00000575207 KAT2BQ92831 832 aa19.47■□□□□ 0.71
VPS53-218ENST00000575207 WNT8BQ93098 351 aa19.47■□□□□ 0.71
VPS53-218ENST00000575207 TRERF1Q96PN7 1200 aa19.47■□□□□ 0.71
VPS53-218ENST00000575207 NYAP2Q9P242 653 aa19.47■□□□□ 0.71
VPS53-218ENST00000575207 FPGT-TNNI3KV9GXZ4 949 aa19.47■□□□□ 0.71
VPS53-218ENST00000575207 E9PSI1 815 aa19.46■□□□□ 0.71
VPS53-218ENST00000575207 CSPG5O95196 566 aa19.46■□□□□ 0.71
VPS53-218ENST00000575207 NRIP1P48552 1158 aa19.46■□□□□ 0.71
VPS53-218ENST00000575207 PPP2R5BQ15173 497 aa19.46■□□□□ 0.71
VPS53-218ENST00000575207 DTWD2Q8NBA8 298 aa19.46■□□□□ 0.71
VPS53-218ENST00000575207 SSH1Q8WYL5 1049 aa19.46■□□□□ 0.71
VPS53-218ENST00000575207 PURBQ96QR8 312 aaKnown RBP19.46■□□□□ 0.71
VPS53-218ENST00000575207 MEIS3Q99687 375 aa19.46■□□□□ 0.71
VPS53-218ENST00000575207 C12orf60Q5U649 245 aa19.45■□□□□ 0.7
VPS53-218ENST00000575207 COPS5Q92905 334 aa19.45■□□□□ 0.7
VPS53-218ENST00000575207 P2RX5Q93086 422 aa19.45■□□□□ 0.7
VPS53-218ENST00000575207 ANTXR1Q9H6X2 564 aa19.45■□□□□ 0.7
VPS53-218ENST00000575207 R4GN57 208 aa19.45■□□□□ 0.7
VPS53-218ENST00000575207 LCTP09848 1927 aa19.45■□□□□ 0.7
VPS53-218ENST00000575207 PI15O43692 258 aa19.44■□□□□ 0.7
VPS53-218ENST00000575207 DNAJB1P25685 340 aa19.44■□□□□ 0.7
VPS53-218ENST00000575207 RPAP2Q8IXW5 612 aaPredicted RBP19.44■□□□□ 0.7
VPS53-218ENST00000575207 ATP8B4Q8TF62 1192 aa19.44■□□□□ 0.7
VPS53-218ENST00000575207 SEPT8Q92599 483 aa19.44■□□□□ 0.7
VPS53-218ENST00000575207 RC3H2Q9HBD1 1191 aaKnown RBP19.44■□□□□ 0.7
VPS53-218ENST00000575207 HDAC6Q9UBN7 1215 aa19.44■□□□□ 0.7
VPS53-218ENST00000575207 ADD3Q9UEY8 706 aaKnown RBP19.44■□□□□ 0.7
VPS53-218ENST00000575207 ZZEF1O43149 2961 aa19.44■□□□□ 0.7
VPS53-218ENST00000575207 RSPH10B2B2RC85 870 aa19.43■□□□□ 0.7
VPS53-218ENST00000575207 RSPH10BP0C881 870 aa19.43■□□□□ 0.7
VPS53-218ENST00000575207 ALDH5A1P51649 535 aaPredicted RBP19.43■□□□□ 0.7
VPS53-218ENST00000575207 MUM1L1Q5H9M0 696 aa19.43■□□□□ 0.7
VPS53-218ENST00000575207 SCFD2Q8WU76 684 aa19.43■□□□□ 0.7
VPS53-218ENST00000575207 SMOC2Q9H3U7 446 aa19.43■□□□□ 0.7
VPS53-218ENST00000575207 ADGRA3Q8IWK6 1321 aa19.43■□□□□ 0.7
VPS53-218ENST00000575207 GREB1LQ9C091 1923 aaPredicted RBP19.43■□□□□ 0.7
VPS53-218ENST00000575207 ARP10275 920 aa19.42■□□□□ 0.7
VPS53-218ENST00000575207 ALAS1P13196 640 aa19.42■□□□□ 0.7
VPS53-218ENST00000575207 RBM23Q86U06 439 aaKnown RBP19.42■□□□□ 0.7
VPS53-218ENST00000575207 FLCNQ8NFG4 579 aa19.42■□□□□ 0.7
VPS53-218ENST00000575207 SPPL3Q8TCT6 385 aa19.42■□□□□ 0.7
VPS53-218ENST00000575207 RTP3Q9BQQ7 232 aa19.42■□□□□ 0.7
VPS53-218ENST00000575207 S1PR5Q9H228 398 aa19.42■□□□□ 0.7
VPS53-218ENST00000575207 SPEGQ15772 3267 aa19.41■□□□□ 0.7
VPS53-218ENST00000575207 CYP2D7A0A087X1C5 515 aa19.41■□□□□ 0.7
VPS53-218ENST00000575207 NPR3P17342 541 aa19.41■□□□□ 0.7
VPS53-218ENST00000575207 NAALADL2Q58DX5 795 aa19.41■□□□□ 0.7
VPS53-218ENST00000575207 C7orf31Q8N865 590 aa19.41■□□□□ 0.7
VPS53-218ENST00000575207 ATP8A2Q9NTI2 1148 aa19.41■□□□□ 0.7
VPS53-218ENST00000575207 DBNLQ9UJU6 430 aaKnown RBP19.41■□□□□ 0.7
VPS53-218ENST00000575207 NR2E1Q9Y466 385 aa19.41■□□□□ 0.7
VPS53-218ENST00000575207 ITGB1P05556 798 aa19.4■□□□□ 0.7
VPS53-218ENST00000575207 MMP3P08254 477 aa19.4■□□□□ 0.7
VPS53-218ENST00000575207 TXNP10599 105 aaKnown RBP19.4■□□□□ 0.7
VPS53-218ENST00000575207 NSMFQ6X4W1 530 aa19.4■□□□□ 0.7
VPS53-218ENST00000575207 LCORLQ8N3X6 602 aa19.4■□□□□ 0.7
VPS53-218ENST00000575207 NEK1Q96PY6 1258 aa19.4■□□□□ 0.7
VPS53-218ENST00000575207 SP100P23497 879 aaPredicted RBP19.39■□□□□ 0.69
VPS53-218ENST00000575207 PDE4BQ07343 736 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms