RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 GHRHP01286 108 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 TRIM27P14373 513 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 PTPRAP18433 802 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 EIF2AK2P19525 551 aaKnown RBP11.31□□□□□ -0.6
CIITA-208ENST00000572665 EN2P19622 333 aaPredicted RBP11.31□□□□□ -0.6
CIITA-208ENST00000572665 MAP3K10Q02779 954 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 MECOMQ03112 1051 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 PABPC4Q13310 644 aaKnown RBP eCLIP11.31□□□□□ -0.6
CIITA-208ENST00000572665 OS9Q13438 667 aaPredicted RBP11.31□□□□□ -0.6
CIITA-208ENST00000572665 CCDC158Q5M9N0 1113 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 SLCO4C1Q6ZQN7 724 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 PRRT2Q7Z6L0 340 aaPredicted RBP11.31□□□□□ -0.6
CIITA-208ENST00000572665 FAM35AQ86V20 835 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 TCF12Q99081 682 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 OSBPL5Q9H0X9 879 aaPredicted RBP11.31□□□□□ -0.6
CIITA-208ENST00000572665 LIN7BQ9HAP6 207 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 IGSF5Q9NSI5 407 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 RAI14Q9P0K7 980 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 LRP2BPQ9P2M1 347 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 SRRDQ9UH36 339 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 GDF2Q9UK05 429 aaPredicted RBP11.31□□□□□ -0.6
CIITA-208ENST00000572665 NAGPAQ9UK23 515 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 MYPNQ86TC9 1320 aa11.31□□□□□ -0.6
CIITA-208ENST00000572665 COL2A1P02458 1487 aaPredicted RBP11.31□□□□□ -0.6
CIITA-208ENST00000572665 KIAA0100Q14667 2235 aaKnown RBP11.31□□□□□ -0.6
CIITA-208ENST00000572665 CTSHP09668 335 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 CPB1P15086 417 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 GRK4P32298 578 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 LCE2CQ5TA81 110 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 GADL1Q6ZQY3 521 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 FTSJ3Q8IY81 847 aaKnown RBP11.3□□□□□ -0.6
CIITA-208ENST00000572665 SMCR8Q8TEV9 937 aaPredicted RBP11.3□□□□□ -0.6
CIITA-208ENST00000572665 CRELD1Q96HD1 420 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 RASSF4Q9H2L5 321 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.3□□□□□ -0.6
CIITA-208ENST00000572665 HMG20BQ9P0W2 317 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 FAM8A1Q9UBU6 413 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 AFG3L2Q9Y4W6 797 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 PTPRFP10586 1907 aa11.3□□□□□ -0.6
CIITA-208ENST00000572665 RFX7Q2KHR2 1363 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 ATRNL1Q5VV63 1379 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 ELOA3CA0A087WX78 387 aaPredicted RBP11.29□□□□□ -0.6
CIITA-208ENST00000572665 ELOA3DA6NLF2 546 aaPredicted RBP11.29□□□□□ -0.6
CIITA-208ENST00000572665 ATP11AP98196 1134 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 ELOA3BQ3SY89 546 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 TTC39AQ5SRH9 613 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 CERS3Q8IU89 383 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 CCNJLQ8IV13 435 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 ZFPM1Q8IX07 1006 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 ELOA3Q8NG57 546 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 SH3TC2Q8TF17 1288 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 NSUN4Q96CB9 384 aaKnown RBP11.29□□□□□ -0.6
CIITA-208ENST00000572665 HHIPQ96QV1 700 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 ARHGAP39Q9C0H5 1083 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 RBSNQ9H1K0 784 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 DHX36Q9H2U1 1008 aaKnown RBP11.29□□□□□ -0.6
CIITA-208ENST00000572665 AS3MTQ9HBK9 375 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 GPR108Q9NPR9 543 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 HERC5Q9UII4 1024 aaKnown RBP11.29□□□□□ -0.6
CIITA-208ENST00000572665 ADGRA2Q96PE1 1338 aa11.29□□□□□ -0.6
CIITA-208ENST00000572665 MAST2Q6P0Q8 1798 aa11.28□□□□□ -0.6
CIITA-208ENST00000572665 ZSWIM8A7E2V4 1837 aa11.28□□□□□ -0.6
CIITA-208ENST00000572665 ATAD5Q96QE3 1844 aa11.28□□□□□ -0.6
CIITA-208ENST00000572665 DDTLA6NHG4 134 aaPredicted RBP11.28□□□□□ -0.6
CIITA-208ENST00000572665 BCRP11274 1271 aa11.28□□□□□ -0.6
CIITA-208ENST00000572665 NAA16Q6N069 864 aaPredicted RBP11.28□□□□□ -0.6
CIITA-208ENST00000572665 TMEM102Q8N9M5 508 aaPredicted RBP11.28□□□□□ -0.6
CIITA-208ENST00000572665 ACDQ96AP0 544 aa11.28□□□□□ -0.6
CIITA-208ENST00000572665 PBX4Q9BYU1 374 aa11.28□□□□□ -0.6
CIITA-208ENST00000572665 BHLHE41Q9C0J9 482 aaPredicted RBP11.28□□□□□ -0.6
CIITA-208ENST00000572665 ABCB6Q9NP58 842 aa11.28□□□□□ -0.6
CIITA-208ENST00000572665 AGTPBP1Q9UPW5 1226 aa11.28□□□□□ -0.6
CIITA-208ENST00000572665 PHIPQ8WWQ0 1821 aa11.28□□□□□ -0.6
CIITA-208ENST00000572665 TRIM75PA6NK02 468 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 TNPO2O14787 897 aaKnown RBP11.27□□□□□ -0.61
CIITA-208ENST00000572665 BCAR3O75815 825 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 USP17L7P0C7H9 530 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 CYP2C8P10632 490 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 EPXP11678 715 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 CAP1Q01518 475 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 MOGSQ13724 837 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 PERM1Q5SV97 790 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 GPAT2Q6NUI2 795 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 TMED8Q6PL24 325 aaPredicted RBP11.27□□□□□ -0.61
CIITA-208ENST00000572665 TEX11Q8IYF3 940 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 COA7Q96BR5 231 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 HTATIP2Q9BUP3 242 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 DDX4Q9NQI0 724 aaKnown RBP11.27□□□□□ -0.61
CIITA-208ENST00000572665 GINM1Q9NU53 330 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 PI4KBQ9UBF8 816 aa11.27□□□□□ -0.61
CIITA-208ENST00000572665 PNMA6EA0A0J9YXQ4 647 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 SURF6O75683 361 aaKnown RBP11.26□□□□□ -0.61
CIITA-208ENST00000572665 GJB1P08034 283 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 TCF3P15923 654 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 GSTT1P30711 240 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 MCAMP43121 646 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 GCLCP48506 637 aaPredicted RBP11.26□□□□□ -0.61
CIITA-208ENST00000572665 RHBDL3P58872 404 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 ATP8B2P98198 1209 aa11.26□□□□□ -0.61
CIITA-208ENST00000572665 TNNI3KQ59H18 835 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms