RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SENP2Q9HC62 589 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 MAD2L2Q9UI95 211 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 MSRAQ9UJ68 235 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 DDX41Q9UJV9 622 aaKnown RBP7.86□□□□□ -1.15
VPS53-213ENST00000572334 PCDHA11Q9Y5I1 949 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 LOXHD1Q8IVV2 1947 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 PALM3A6NDB9 673 aaPredicted RBP7.85□□□□□ -1.15
VPS53-213ENST00000572334 HAS3O00219 553 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 RFXAPO00287 272 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 PITPNM1O00562 1244 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 CYTH3O43739 400 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 KPNA6O60684 536 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 PFKMP08237 780 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 SUPT20HL2P0C7V6 817 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 HOXD8P13378 290 aaPredicted RBP7.85□□□□□ -1.15
VPS53-213ENST00000572334 HSD17B4P51659 736 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 PTH1RQ03431 593 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 PTPN11Q06124 597 aaPredicted RBP7.85□□□□□ -1.15
VPS53-213ENST00000572334 COL9A3Q14050 684 aaPredicted RBP7.85□□□□□ -1.15
VPS53-213ENST00000572334 FAM47CQ5HY64 1035 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 TJAP1Q5JTD0 557 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 TRAF7Q6Q0C0 670 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 SEPT14Q6ZU15 432 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 IQCA1Q86XH1 822 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 FBXO11Q86XK2 927 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 IL31RAQ8NI17 732 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 WNT8BQ93098 351 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 EMID1Q96A84 441 aaPredicted RBP7.85□□□□□ -1.15
VPS53-213ENST00000572334 IWS1Q96ST2 819 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 RMDN3Q96TC7 470 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 GAS2L1Q99501 681 aaPredicted RBP7.85□□□□□ -1.15
VPS53-213ENST00000572334 KAT14Q9H8E8 782 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 VAT1LQ9HCJ6 419 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 PXMP2Q9NR77 195 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 DIAPH3Q9NSV4 1193 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 SLC4A7Q9Y6M7 1214 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 NLRC5Q86WI3 1866 aa7.85□□□□□ -1.15
VPS53-213ENST00000572334 HIP1O00291 1037 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 GH1P01241 217 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 NR3C2P08235 984 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 CYP21A2P08686 494 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 PARP1P09874 1014 aaKnown RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 ATP2A2P16615 1042 aaKnown RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 EIF2AK2P19525 551 aaKnown RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 POU3F3P20264 500 aaPredicted RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 RFC2P35250 354 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 SP2Q02086 613 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 RBL2Q08999 1139 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 CCDC85BQ15834 202 aaPredicted RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 IMMTQ16891 758 aaKnown RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 TRIM71Q2Q1W2 868 aaKnown RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 CCDC178Q5BJE1 867 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 TTC22Q5TAA0 569 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 STOX1Q6ZVD7 989 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 NSUN6Q8TEA1 469 aaKnown RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 PPM1EQ8WY54 764 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 GPKOWQ92917 476 aaPredicted RBP eCLIP7.84□□□□□ -1.15
VPS53-213ENST00000572334 PDCD2LQ9BRP1 358 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 MTIF3Q9H2K0 278 aaKnown RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 BCAS3Q9H6U6 928 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 RIOX1Q9H6W3 641 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 SLC28A3Q9HAS3 691 aa7.84□□□□□ -1.15
VPS53-213ENST00000572334 GPHNQ9NQX3 736 aaPredicted RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 MRPL11Q9Y3B7 192 aaKnown RBP7.84□□□□□ -1.15
VPS53-213ENST00000572334 RAD50Q92878 1312 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 ZBBXA8MT70 800 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 KLRF2D3W0D1 207 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 LPXNO60711 386 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 NBNO60934 754 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 EIF3JO75822 258 aaKnown RBP7.83□□□□□ -1.16
VPS53-213ENST00000572334 F2P00734 622 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 CFBP00751 764 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 CXCL10P02778 98 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 CA3P07451 260 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 ZNF286BP0CG31 522 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 IGFBP4P22692 258 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 CHMLP26374 656 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 ANTXR2P58335 489 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 ZNF200P98182 395 aaPredicted RBP7.83□□□□□ -1.16
VPS53-213ENST00000572334 TAP1Q03518 808 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 TROAPQ12815 778 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 MKRN4PQ13434 485 aaPredicted RBP7.83□□□□□ -1.16
VPS53-213ENST00000572334 MBTPS1Q14703 1052 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 GRM4Q14833 912 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 STXBP2Q15833 593 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 PTGISQ16647 500 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 HSDL1Q3SXM5 330 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 IFIT1BQ5T764 474 aaKnown RBP7.83□□□□□ -1.16
VPS53-213ENST00000572334 MYSM1Q5VVJ2 828 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 PPP2R2DQ66LE6 453 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 KRT40Q6A162 431 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 CHST3Q7LGC8 479 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 TMCO2Q7Z6W1 182 aaPredicted RBP7.83□□□□□ -1.16
VPS53-213ENST00000572334 VSIG10LQ86VR7 867 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 MCF2L2Q86YR7 1114 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 PHOSPHO2Q8TCD6 241 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 ATXN2LQ8WWM7 1075 aaKnown RBP7.83□□□□□ -1.16
VPS53-213ENST00000572334 ZFP91Q96JP5 570 aaPredicted RBP7.83□□□□□ -1.16
VPS53-213ENST00000572334 ASB2Q96Q27 587 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 MPHOSPH6Q99547 160 aaKnown RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms