RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 VAT1LQ9HCJ6 419 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 BMP2KQ9NSY1 1161 aaPredicted RBP11.9□□□□□ -0.5
CCDC40-207ENST00000572253 ANKRD65E5RJM6 399 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 EIF3HO15372 352 aaKnown RBP eCLIP11.9□□□□□ -0.5
CCDC40-207ENST00000572253 TNFRSF8P28908 595 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 RASSF7Q02833 373 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 SLC10A5Q5PT55 438 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 SFMBT2Q5VUG0 894 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 HAUS3Q68CZ6 603 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 POTEDQ86YR6 584 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 ANKRD13CQ8N6S4 541 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 LRRC15Q8TF66 581 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 TGFBRAP1Q8WUH2 860 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 HDAC7Q8WUI4 952 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 HPS3Q969F9 1004 aa11.9□□□□□ -0.5
CCDC40-207ENST00000572253 LAMB2P55268 1798 aa11.9□□□□□ -0.51
CCDC40-207ENST00000572253 KIAA0754O94854 1291 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 EPB41P11171 864 aaKnown RBP11.89□□□□□ -0.51
CCDC40-207ENST00000572253 GTF2A1P52655 376 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-207ENST00000572253 ICE2Q659A1 982 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 B4GALNT4Q76KP1 1039 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 CERS3Q8IU89 383 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 PROM2Q8N271 834 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 SH3RF3Q8TEJ3 882 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-207ENST00000572253 SH3GL2Q99962 352 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 BIN2Q9UBW5 565 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-207ENST00000572253 PHLPP1O60346 1717 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 MYMKA6NI61 221 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 ERLIN2O94905 339 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 NBPF5PQ86XG9 351 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-207ENST00000572253 MYOCDQ8IZQ8 938 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 SNX29Q8TEQ0 813 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 TAF4BQ92750 862 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 ROBO3Q96MS0 1386 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 hCG_1984214I3L0E3 225 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 EPS15P42566 896 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 NOP2P46087 812 aaKnown RBP11.89□□□□□ -0.51
CCDC40-207ENST00000572253 ZNF713Q8N859 430 aaPredicted RBP11.89□□□□□ -0.51
CCDC40-207ENST00000572253 EYA3Q99504 573 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 LAMB1P07942 1786 aa11.89□□□□□ -0.51
CCDC40-207ENST00000572253 NCK2O43639 380 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 BUB1O43683 1085 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 SMARCA1P28370 1054 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 IPO4Q8TEX9 1081 aaKnown RBP11.88□□□□□ -0.51
CCDC40-207ENST00000572253 SETDB2Q96T68 719 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 CEP72Q9P209 647 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 SAP30BPQ9UHR5 308 aaKnown RBP11.88□□□□□ -0.51
CCDC40-207ENST00000572253 FAM169AQ9Y6X4 670 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 TRAF5O00463 557 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 NDUFAB1O14561 156 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 EPHB6O15197 1021 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 CLSTN1O94985 981 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 SERPING1P05155 500 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 RASA1P20936 1047 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 USP8P40818 1118 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 GFPT1Q06210 699 aaPredicted RBP11.88□□□□□ -0.51
CCDC40-207ENST00000572253 GRB10Q13322 594 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 SLC35G1Q2M3R5 365 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 MICALCLQ6ZW33 695 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 PACS2Q86VP3 889 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 SLC44A5Q8NCS7 719 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 RAD54LQ92698 747 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 MMTAG2Q9BU76 263 aaKnown RBP11.88□□□□□ -0.51
CCDC40-207ENST00000572253 NLRC4Q9NPP4 1024 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 ESYT2A0FGR8 921 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 SLC1A4P43007 532 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 FXR2P51116 673 aaKnown RBP eCLIP11.88□□□□□ -0.51
CCDC40-207ENST00000572253 ADCY7P51828 1080 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 TNNC1P63316 161 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 MRPS25P82663 173 aaKnown RBP11.88□□□□□ -0.51
CCDC40-207ENST00000572253 FKBP3Q00688 224 aaKnown RBP11.88□□□□□ -0.51
CCDC40-207ENST00000572253 SEPT2Q15019 361 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 SPATS2Q86XZ4 545 aaKnown RBP11.88□□□□□ -0.51
CCDC40-207ENST00000572253 GPIHBP1Q8IV16 184 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 MAPKAPK5Q8IW41 473 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 IFT81Q8WYA0 676 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 RBM12Q9NTZ6 932 aaKnown RBP11.88□□□□□ -0.51
CCDC40-207ENST00000572253 COL4A3BPQ9Y5P4 624 aa11.88□□□□□ -0.51
CCDC40-207ENST00000572253 GRID2IPA4D2P6 1211 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 GOLGA6L10A6NI86 522 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 GNA14O95837 355 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 CPP00450 1065 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 SKOR1P84550 965 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 BAP1Q92560 729 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 SYN2Q92777 582 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-207ENST00000572253 TLR10Q9BXR5 811 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 CPVLQ9H3G5 476 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 ANKIB1Q9P2G1 1089 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 SCN7AQ01118 1682 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 HEXIM1O94992 359 aaKnown RBP11.87□□□□□ -0.51
CCDC40-207ENST00000572253 INPP5BP32019 993 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 DNA2P51530 1060 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 FOXR2Q6PJQ5 311 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 CCDC43Q96MW1 224 aaKnown RBP11.87□□□□□ -0.51
CCDC40-207ENST00000572253 PIGSQ96S52 555 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.87□□□□□ -0.51
CCDC40-207ENST00000572253 BLOC1S4Q9NUP1 217 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 SMARCAL1Q9NZC9 954 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 ATP2B2Q01814 1243 aa11.87□□□□□ -0.51
CCDC40-207ENST00000572253 PDIA5Q14554 519 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms