RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 TGS1Q96RS0 853 aaKnown RBP23.29■■□□□ 1.32
CCDC40-206ENST00000572083 RAD9AQ99638 391 aa23.29■■□□□ 1.32
CCDC40-206ENST00000572083 SALL3Q9BXA9 1300 aa23.29■■□□□ 1.32
CCDC40-206ENST00000572083 A0A0D9SFI3 127 aa23.28■■□□□ 1.32
CCDC40-206ENST00000572083 CASTP20810 708 aaKnown RBP23.28■■□□□ 1.32
CCDC40-206ENST00000572083 RBL2Q08999 1139 aa23.28■■□□□ 1.32
CCDC40-206ENST00000572083 TAAR1Q96RJ0 339 aa23.28■■□□□ 1.32
CCDC40-206ENST00000572083 ALG1Q9BT22 464 aa23.28■■□□□ 1.32
CCDC40-206ENST00000572083 UBA5Q9GZZ9 404 aa23.28■■□□□ 1.32
CCDC40-206ENST00000572083 HELLSQ9NRZ9 838 aa23.28■■□□□ 1.32
CCDC40-206ENST00000572083 COL20A1Q9P218 1284 aa23.28■■□□□ 1.32
CCDC40-206ENST00000572083 HDAC6Q9UBN7 1215 aa23.28■■□□□ 1.32
CCDC40-206ENST00000572083 PCDHB15Q9Y5E8 787 aa23.28■■□□□ 1.32
CCDC40-206ENST00000572083 PI4K2BG5E9Z4 385 aa23.27■■□□□ 1.32
CCDC40-206ENST00000572083 ERVK-21P61565 698 aa23.27■■□□□ 1.32
CCDC40-206ENST00000572083 C7orf31Q8N865 590 aa23.27■■□□□ 1.32
CCDC40-206ENST00000572083 RGS22Q8NE09 1264 aa23.27■■□□□ 1.32
CCDC40-206ENST00000572083 EVI5LQ96CN4 794 aa23.27■■□□□ 1.32
CCDC40-206ENST00000572083 CRBNQ96SW2 442 aa23.27■■□□□ 1.32
CCDC40-206ENST00000572083 KIAA1217Q5T5P2 1943 aa23.27■■□□□ 1.32
CCDC40-206ENST00000572083 ABHD14A-ACY1A0A1B0GW23 586 aa23.26■■□□□ 1.31
CCDC40-206ENST00000572083 PARNO95453 639 aaKnown RBP23.26■■□□□ 1.31
CCDC40-206ENST00000572083 ZNF286BP0CG31 522 aa23.26■■□□□ 1.31
CCDC40-206ENST00000572083 KCNA5P22460 613 aa23.26■■□□□ 1.31
CCDC40-206ENST00000572083 PSEN2P49810 448 aa23.26■■□□□ 1.31
CCDC40-206ENST00000572083 CDC37Q16543 378 aaPredicted RBP23.26■■□□□ 1.31
CCDC40-206ENST00000572083 DGKDQ16760 1214 aa23.26■■□□□ 1.31
CCDC40-206ENST00000572083 GPATCH4Q5T3I0 446 aaKnown RBP23.26■■□□□ 1.31
CCDC40-206ENST00000572083 ZNF589Q86UQ0 364 aaPredicted RBP23.26■■□□□ 1.31
CCDC40-206ENST00000572083 SYTL5Q8TDW5 730 aaPredicted RBP23.26■■□□□ 1.31
CCDC40-206ENST00000572083 WNT8BQ93098 351 aa23.26■■□□□ 1.31
CCDC40-206ENST00000572083 ZKSCAN3Q9BRR0 538 aa23.26■■□□□ 1.31
CCDC40-206ENST00000572083 HSPD1P10809 573 aaKnown RBP23.25■■□□□ 1.31
CCDC40-206ENST00000572083 IKBKEQ14164 716 aa23.25■■□□□ 1.31
CCDC40-206ENST00000572083 STXBP2Q15833 593 aa23.25■■□□□ 1.31
CCDC40-206ENST00000572083 ZNF618Q5T7W0 954 aa23.25■■□□□ 1.31
CCDC40-206ENST00000572083 DIEXFQ68CQ4 756 aaKnown RBP23.25■■□□□ 1.31
CCDC40-206ENST00000572083 TBC1D10CQ8IV04 446 aa23.25■■□□□ 1.31
CCDC40-206ENST00000572083 NSUN6Q8TEA1 469 aaKnown RBP23.25■■□□□ 1.31
CCDC40-206ENST00000572083 TTC14Q96N46 770 aa23.25■■□□□ 1.31
CCDC40-206ENST00000572083 ZMYM6O95789 1325 aa23.25■■□□□ 1.31
CCDC40-206ENST00000572083 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.24■■□□□ 1.31
CCDC40-206ENST00000572083 EFCAB14O75071 495 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 ZNF200P98182 395 aaPredicted RBP23.24■■□□□ 1.31
CCDC40-206ENST00000572083 MBTPS1Q14703 1052 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 MFSD10Q14728 455 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 KIAA0753Q2KHM9 967 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 TRAF7Q6Q0C0 670 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 MFSD6Q6ZSS7 791 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.24■■□□□ 1.31
CCDC40-206ENST00000572083 RMDN3Q96TC7 470 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 C17orf80Q9BSJ5 609 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 KATNAL1Q9BW62 490 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 ABCB11O95342 1321 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 NEDD4P46934 1319 aa23.24■■□□□ 1.31
CCDC40-206ENST00000572083 MUC6Q6W4X9 2439 aa23.23■■□□□ 1.31
CCDC40-206ENST00000572083 IL9P15248 144 aa23.23■■□□□ 1.31
CCDC40-206ENST00000572083 EIF2AK2P19525 551 aaKnown RBP23.23■■□□□ 1.31
CCDC40-206ENST00000572083 PTK7Q13308 1070 aa23.23■■□□□ 1.31
CCDC40-206ENST00000572083 TRIM71Q2Q1W2 868 aaKnown RBP23.23■■□□□ 1.31
CCDC40-206ENST00000572083 LEXMQ3ZCV2 418 aa23.23■■□□□ 1.31
CCDC40-206ENST00000572083 MCMDC2Q4G0Z9 681 aa23.23■■□□□ 1.31
CCDC40-206ENST00000572083 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.23■■□□□ 1.31
CCDC40-206ENST00000572083 FAM178BQ8IXR5 827 aa23.23■■□□□ 1.31
CCDC40-206ENST00000572083 GJD3Q8N144 294 aa23.23■■□□□ 1.31
CCDC40-206ENST00000572083 FBXO22Q8NEZ5 403 aa23.23■■□□□ 1.31
CCDC40-206ENST00000572083 DDX41Q9UJV9 622 aaKnown RBP23.23■■□□□ 1.31
CCDC40-206ENST00000572083 MRVI1Q9Y6F6 885 aa23.23■■□□□ 1.31
CCDC40-206ENST00000572083 F2P00734 622 aa23.22■■□□□ 1.31
CCDC40-206ENST00000572083 SSTR3P32745 418 aaPredicted RBP23.22■■□□□ 1.31
CCDC40-206ENST00000572083 NMIQ13287 307 aaPredicted RBP23.22■■□□□ 1.31
CCDC40-206ENST00000572083 ARHGEF16Q5VV41 709 aa23.22■■□□□ 1.31
CCDC40-206ENST00000572083 IWS1Q96ST2 819 aa23.22■■□□□ 1.31
CCDC40-206ENST00000572083 HAS3O00219 553 aa23.21■■□□□ 1.31
CCDC40-206ENST00000572083 LGR5O75473 907 aa23.21■■□□□ 1.31
CCDC40-206ENST00000572083 HIC1Q14526 733 aa23.21■■□□□ 1.31
CCDC40-206ENST00000572083 PTCRAQ6ISU1 281 aaPredicted RBP23.21■■□□□ 1.31
CCDC40-206ENST00000572083 ADGRF4Q8IZF3 695 aa23.21■■□□□ 1.31
CCDC40-206ENST00000572083 PPTC7Q8NI37 304 aa23.21■■□□□ 1.31
CCDC40-206ENST00000572083 EMID1Q96A84 441 aaPredicted RBP23.21■■□□□ 1.31
CCDC40-206ENST00000572083 WDFY4Q6ZS81 3184 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 CCDC171Q6TFL3 1326 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 PRR33A8MZF0 331 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 SORBS3O60504 671 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 QRICH1Q2TAL8 776 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 MCF2L2Q86YR7 1114 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 DHX37Q8IY37 1157 aaKnown RBP23.2■■□□□ 1.3
CCDC40-206ENST00000572083 MYOCDQ8IZQ8 938 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 PNMA1Q8ND90 353 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 ESR2Q92731 530 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 ZBTB47Q9UFB7 747 aaPredicted RBP23.2■■□□□ 1.3
CCDC40-206ENST00000572083 INSL6Q9Y581 213 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 MICAL3Q7RTP6 2002 aa23.2■■□□□ 1.3
CCDC40-206ENST00000572083 PCP11498 1178 aaKnown RBP23.19■■□□□ 1.3
CCDC40-206ENST00000572083 PDE1AP54750 535 aa23.19■■□□□ 1.3
CCDC40-206ENST00000572083 LAMC2Q13753 1193 aa23.19■■□□□ 1.3
CCDC40-206ENST00000572083 ANKRD45Q5TZF3 282 aa23.19■■□□□ 1.3
CCDC40-206ENST00000572083 DBF4BQ8NFT6 615 aa23.19■■□□□ 1.3
CCDC40-206ENST00000572083 MAF1Q9H063 256 aa23.19■■□□□ 1.3
CCDC40-206ENST00000572083 PXMP2Q9NR77 195 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms