RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 MYOGP15173 224 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 STAT3P40763 770 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 ZAP70P43403 619 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 GJA9P57773 515 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 GABPAQ06546 454 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 G3BP1Q13283 466 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS53-208ENST00000570650 MAMDC4Q6UXC1 1216 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 TMEM179Q6ZVK1 233 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 RPUSD2Q8IZ73 545 aaKnown RBP7.07□□□□□ -1.28
VPS53-208ENST00000570650 SPICE1Q8N0Z3 855 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 ZNF512BQ96KM6 892 aaPredicted RBP7.07□□□□□ -1.28
VPS53-208ENST00000570650 UCN2Q96RP3 112 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 API5Q9BZZ5 524 aaKnown RBP7.07□□□□□ -1.28
VPS53-208ENST00000570650 UPF3AQ9H1J1 476 aaKnown RBP7.07□□□□□ -1.28
VPS53-208ENST00000570650 SH2D4AQ9H788 454 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 VCPKMTQ9H867 229 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 PIH1D3Q9NQM4 214 aaKnown RBP7.07□□□□□ -1.28
VPS53-208ENST00000570650 ADAMTS5Q9UNA0 930 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 TMX2Q9Y320 296 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 UMODL1Q5DID0 1318 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 E9PSI1 815 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 WFS1O76024 890 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 SKIP12755 728 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 ATP2A2P16615 1042 aaKnown RBP7.06□□□□□ -1.28
VPS53-208ENST00000570650 CCL23P55773 120 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 PTSQ03393 145 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 ICA1Q05084 483 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 USP4Q13107 963 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 CLN3Q13286 438 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 ACVR2BQ13705 512 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 MAP7D1Q3KQU3 841 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 TNNI3KQ59H18 835 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 TMEM67Q5HYA8 995 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 GNASQ5JWF2 1037 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 MAGEB6Q8N7X4 407 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 DBNDD2Q9BQY9 259 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 GPR108Q9NPR9 543 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 FPGT-TNNI3KV9GXZ4 949 aa7.06□□□□□ -1.28
VPS53-208ENST00000570650 MYO5AQ9Y4I1 1855 aaKnown RBP7.06□□□□□ -1.28
VPS53-208ENST00000570650 BDP1A6H8Y1 2624 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 DNAJC25-GNG10A0A024R161 153 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 EPOPA6NHQ4 379 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 H3BM21 787 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 VWA5AO00534 786 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 ADCY6O43306 1168 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 IL2RAP01589 272 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 CA3P07451 260 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 PFKMP08237 780 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 RNF144AP50876 292 aaPredicted RBP7.05□□□□□ -1.28
VPS53-208ENST00000570650 NKX3-2P78367 333 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 NHLH1Q02575 133 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 CCDC144BQ3MJ40 725 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 KRT40Q6A162 431 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 TMED8Q6PL24 325 aaPredicted RBP7.05□□□□□ -1.28
VPS53-208ENST00000570650 SIAH1Q8IUQ4 282 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 SLC43A3Q8NBI5 491 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 GLMNQ92990 594 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 DDX11Q96FC9 970 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 NOC4LQ9BVI4 516 aaKnown RBP7.05□□□□□ -1.28
VPS53-208ENST00000570650 SEZ6LQ9BYH1 1024 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 WNT8AQ9H1J5 351 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 KCNH6Q9H252 994 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 ABHD16BQ9H3Z7 469 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 CERS4Q9HA82 394 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 CD320Q9NPF0 282 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 FBXO28Q9NVF7 368 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 SWAP70Q9UH65 585 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 ZNF214Q9UL59 606 aaPredicted RBP7.05□□□□□ -1.28
VPS53-208ENST00000570650 PPP1R9AQ9ULJ8 1098 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 NOB1Q9ULX3 412 aaKnown RBP7.05□□□□□ -1.28
VPS53-208ENST00000570650 COL11A1P12107 1806 aaPredicted RBP7.05□□□□□ -1.28
VPS53-208ENST00000570650 PARP14Q460N5 1801 aa7.05□□□□□ -1.28
VPS53-208ENST00000570650 CHD7Q9P2D1 2997 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 PNMA6EA0A0J9YXQ4 647 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 CTAGE5O15320 804 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 B4GALT4O60513 344 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 PPFIA3O75145 1194 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 CABYRO75952 493 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 TAP1Q03518 808 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 ITGA7Q13683 1181 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 TTLL4Q14679 1199 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 CXCL17Q6UXB2 119 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 CLEC10AQ8IUN9 316 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 GJD3Q8N144 294 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 DEPDC4Q8N2C3 294 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 REPS2Q8NFH8 660 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 PHOSPHO2Q8TCD6 241 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 ARNTL2Q8WYA1 636 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 CCDC17Q96LX7 622 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 UIMC1Q96RL1 719 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 SLC9A7Q96T83 725 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 RIOK1Q9BRS2 568 aaKnown RBP7.04□□□□□ -1.28
VPS53-208ENST00000570650 TEX13BQ9BXU2 312 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 CRNKL1Q9BZJ0 848 aaKnown RBP7.04□□□□□ -1.28
VPS53-208ENST00000570650 MCM9Q9NXL9 1143 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 NAV1Q8NEY1 1877 aa7.04□□□□□ -1.28
VPS53-208ENST00000570650 XIRP2A4UGR9 3374 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 KIF28PB7ZC32 967 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 ZEB2O60315 1214 aa7.03□□□□□ -1.28
VPS53-208ENST00000570650 GNAI2P04899 355 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms