RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 WDR87Q6ZQQ6 2873 aa21.47■■□□□ 1.03
CLK3-227ENST00000570296 VCPP55072 806 aaKnown RBP21.47■■□□□ 1.03
CLK3-227ENST00000570296 SIGLEC14Q08ET2 396 aa21.47■■□□□ 1.03
CLK3-227ENST00000570296 PTK7Q13308 1070 aa21.47■■□□□ 1.03
CLK3-227ENST00000570296 MBTPS1Q14703 1052 aa21.47■■□□□ 1.03
CLK3-227ENST00000570296 GIMAP6Q6P9H5 292 aa21.47■■□□□ 1.03
CLK3-227ENST00000570296 STK11IPQ8N1F8 1099 aa21.47■■□□□ 1.03
CLK3-227ENST00000570296 YME1L1Q96TA2 773 aa21.47■■□□□ 1.03
CLK3-227ENST00000570296 LMAN2LQ9H0V9 348 aa21.47■■□□□ 1.03
CLK3-227ENST00000570296 GTF2IRD1Q9UHL9 959 aa21.47■■□□□ 1.03
CLK3-227ENST00000570296 ICAM1P05362 532 aa21.46■■□□□ 1.03
CLK3-227ENST00000570296 TXNP10599 105 aaKnown RBP21.46■■□□□ 1.03
CLK3-227ENST00000570296 AVPR2P30518 371 aa21.46■■□□□ 1.03
CLK3-227ENST00000570296 PDE4DQ08499 809 aa21.46■■□□□ 1.03
CLK3-227ENST00000570296 HYAL1Q12794 435 aa21.46■■□□□ 1.03
CLK3-227ENST00000570296 HSP90AB4PQ58FF6 505 aa21.46■■□□□ 1.03
CLK3-227ENST00000570296 ASCL5Q7RTU5 278 aa21.46■■□□□ 1.03
CLK3-227ENST00000570296 FSD1Q9BTV5 496 aa21.46■■□□□ 1.03
CLK3-227ENST00000570296 PRR12Q9ULL5 1215 aa21.46■■□□□ 1.03
CLK3-227ENST00000570296 MINDY4BA8MYZ0 360 aa21.45■■□□□ 1.02
CLK3-227ENST00000570296 LOC730098B7Z3J9 87 aa21.45■■□□□ 1.02
CLK3-227ENST00000570296 TBX10O75333 385 aa21.45■■□□□ 1.02
CLK3-227ENST00000570296 ID4P47928 161 aa21.45■■□□□ 1.02
CLK3-227ENST00000570296 TRIM71Q2Q1W2 868 aaKnown RBP21.45■■□□□ 1.02
CLK3-227ENST00000570296 ZNF618Q5T7W0 954 aa21.45■■□□□ 1.02
CLK3-227ENST00000570296 CLASRPQ8N2M8 674 aaKnown RBP21.45■■□□□ 1.02
CLK3-227ENST00000570296 RHPN1Q8TCX5 695 aa21.45■■□□□ 1.02
CLK3-227ENST00000570296 KAT2BQ92831 832 aa21.45■■□□□ 1.02
CLK3-227ENST00000570296 PUS7LQ9H0K6 701 aaKnown RBP21.45■■□□□ 1.02
CLK3-227ENST00000570296 ZNF292O60281 2723 aa21.45■■□□□ 1.02
CLK3-227ENST00000570296 PRR23AA6NEV1 266 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 CHGBP05060 677 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 MMP3P08254 477 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 MCCP23508 829 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 EDNRBP24530 442 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 SNAP25P60880 206 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 PDE4BQ07343 736 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 CBX2Q14781 532 aaPredicted RBP21.44■■□□□ 1.02
CLK3-227ENST00000570296 C7orf31Q8N865 590 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 DBF4BQ8NFT6 615 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 NEDD1Q8NHV4 660 aa21.44■■□□□ 1.02
CLK3-227ENST00000570296 PTPDC1A2A3K4 754 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 C5orf67F2Z3F1 127 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 H0Y858 1186 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 PRDM1O75626 825 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 EYA4O95677 639 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 RB1P06400 928 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 IFIT2P09913 472 aaKnown RBP21.43■■□□□ 1.02
CLK3-227ENST00000570296 RCSD1Q6JBY9 416 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 ZSCAN25Q6NSZ9 544 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 AFG1LQ8WV93 481 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 TOP1MTQ969P6 601 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 ASIC4Q96FT7 647 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 STRBPQ96SI9 672 aaKnown RBP21.43■■□□□ 1.02
CLK3-227ENST00000570296 TLR9Q9NR96 1032 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 HDAC6Q9UBN7 1215 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 TRPC6Q9Y210 931 aa21.43■■□□□ 1.02
CLK3-227ENST00000570296 GSG1L2A8MUP6 293 aa21.42■■□□□ 1.02
CLK3-227ENST00000570296 NFIBO00712 420 aa21.42■■□□□ 1.02
CLK3-227ENST00000570296 CASTP20810 708 aaKnown RBP21.42■■□□□ 1.02
CLK3-227ENST00000570296 CEP85Q6P2H3 762 aa21.42■■□□□ 1.02
CLK3-227ENST00000570296 KCTD1Q719H9 257 aa21.42■■□□□ 1.02
CLK3-227ENST00000570296 C11orf84Q9BUA3 381 aaPredicted RBP21.42■■□□□ 1.02
CLK3-227ENST00000570296 B4DLN1 442 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 ARIH2O95376 493 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 TSPY3P0CV98 308 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 TSPY8P0CW00 308 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 CTNNB1P35222 781 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 NBL1P41271 181 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 MRPL12P52815 198 aaKnown RBP21.41■■□□□ 1.02
CLK3-227ENST00000570296 PLEKHG4Q58EX7 1191 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 PPP4R3BQ5MIZ7 849 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 SLC30A10Q6XR72 485 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 DNERQ8NFT8 737 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 MSLNLQ96KJ4 702 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 KATNAL1Q9BW62 490 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 RANBP17Q9H2T7 1088 aaKnown RBP21.41■■□□□ 1.02
CLK3-227ENST00000570296 BOLA2Q9H3K6 86 aa21.41■■□□□ 1.02
CLK3-227ENST00000570296 ATP5JP18859 108 aa21.4■■□□□ 1.02
CLK3-227ENST00000570296 CALML3P27482 149 aa21.4■■□□□ 1.02
CLK3-227ENST00000570296 ADAM15Q13444 863 aa21.4■■□□□ 1.02
CLK3-227ENST00000570296 ZKSCAN2Q63HK3 967 aa21.4■■□□□ 1.02
CLK3-227ENST00000570296 WNT8BQ93098 351 aa21.4■■□□□ 1.02
CLK3-227ENST00000570296 HAUS7Q99871 368 aa21.4■■□□□ 1.02
CLK3-227ENST00000570296 RWDD3Q9Y3V2 267 aa21.4■■□□□ 1.02
CLK3-227ENST00000570296 TPRP12270 2363 aaKnown RBP21.4■■□□□ 1.02
CLK3-227ENST00000570296 KMT2BQ9UMN6 2715 aaPredicted RBP21.39■■□□□ 1.02
CLK3-227ENST00000570296 GALR2O43603 387 aaPredicted RBP21.39■■□□□ 1.01
CLK3-227ENST00000570296 GH1P01241 217 aa21.39■■□□□ 1.01
CLK3-227ENST00000570296 NDUFV1P49821 464 aa21.39■■□□□ 1.01
CLK3-227ENST00000570296 DGKDQ16760 1214 aa21.39■■□□□ 1.01
CLK3-227ENST00000570296 CCDC62Q6P9F0 684 aa21.39■■□□□ 1.01
CLK3-227ENST00000570296 RNF207Q6ZRF8 634 aa21.39■■□□□ 1.01
CLK3-227ENST00000570296 IGFLR1Q9H665 355 aa21.39■■□□□ 1.01
CLK3-227ENST00000570296 NCOR2Q9Y618 2525 aa21.39■■□□□ 1.01
CLK3-227ENST00000570296 KIAA1217Q5T5P2 1943 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 RSPH10B2B2RC85 870 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 GRM6O15303 877 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 LINC01565O15544 149 aa21.38■■□□□ 1.01
CLK3-227ENST00000570296 RSPH10BP0C881 870 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms