RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 BIN2Q9UBW5 565 aaPredicted RBP9.01□□□□□ -0.97
VPS39-213ENST00000570062 GREB1LQ9C091 1923 aaPredicted RBP9.01□□□□□ -0.97
VPS39-213ENST00000570062 SHTN1A0MZ66 631 aa9□□□□□ -0.97
VPS39-213ENST00000570062 VWA3AA6NCI4 1184 aa9□□□□□ -0.97
VPS39-213ENST00000570062 BECN2A8MW95 431 aa9□□□□□ -0.97
VPS39-213ENST00000570062 POLR2DO15514 142 aaKnown RBP9□□□□□ -0.97
VPS39-213ENST00000570062 CYP3A4P08684 503 aa9□□□□□ -0.97
VPS39-213ENST00000570062 VEGFAP15692 232 aaPredicted RBP9□□□□□ -0.97
VPS39-213ENST00000570062 YBX3P16989 372 aaKnown RBP eCLIP9□□□□□ -0.97
VPS39-213ENST00000570062 CIITAP33076 1130 aa9□□□□□ -0.97
VPS39-213ENST00000570062 EPHX2P34913 555 aa9□□□□□ -0.97
VPS39-213ENST00000570062 PPP1R2P41236 205 aa9□□□□□ -0.97
VPS39-213ENST00000570062 COPS2P61201 443 aa9□□□□□ -0.97
VPS39-213ENST00000570062 JAG1P78504 1218 aa9□□□□□ -0.97
VPS39-213ENST00000570062 GHRHRQ02643 423 aa9□□□□□ -0.97
VPS39-213ENST00000570062 SPP2Q13103 211 aa9□□□□□ -0.97
VPS39-213ENST00000570062 PABPC4Q13310 644 aaKnown RBP eCLIP9□□□□□ -0.97
VPS39-213ENST00000570062 DHX8Q14562 1220 aaKnown RBP9□□□□□ -0.97
VPS39-213ENST00000570062 CALCRLQ16602 461 aa9□□□□□ -0.97
VPS39-213ENST00000570062 SH3D19Q5HYK7 790 aa9□□□□□ -0.97
VPS39-213ENST00000570062 EARS2Q5JPH6 523 aaKnown RBP9□□□□□ -0.97
VPS39-213ENST00000570062 JAKMIP3Q5VZ66 844 aa9□□□□□ -0.97
VPS39-213ENST00000570062 XRRA1Q6P2D8 792 aa9□□□□□ -0.97
VPS39-213ENST00000570062 ARMC9Q7Z3E5 817 aa9□□□□□ -0.97
VPS39-213ENST00000570062 GAS2L3Q86XJ1 694 aa9□□□□□ -0.97
VPS39-213ENST00000570062 ANKRD13AQ8IZ07 590 aa9□□□□□ -0.97
VPS39-213ENST00000570062 MLKLQ8NB16 471 aa9□□□□□ -0.97
VPS39-213ENST00000570062 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9□□□□□ -0.97
VPS39-213ENST00000570062 ZNF526Q8TF50 670 aaPredicted RBP9□□□□□ -0.97
VPS39-213ENST00000570062 KIFC2Q96AC6 838 aa9□□□□□ -0.97
VPS39-213ENST00000570062 CALML4Q96GE6 196 aa9□□□□□ -0.97
VPS39-213ENST00000570062 CLIC6Q96NY7 704 aa9□□□□□ -0.97
VPS39-213ENST00000570062 GSDMAQ96QA5 445 aa9□□□□□ -0.97
VPS39-213ENST00000570062 RBSNQ9H1K0 784 aa9□□□□□ -0.97
VPS39-213ENST00000570062 CPVLQ9H3G5 476 aa9□□□□□ -0.97
VPS39-213ENST00000570062 GOLPH3LQ9H4A5 285 aa9□□□□□ -0.97
VPS39-213ENST00000570062 TUBE1Q9UJT0 475 aa9□□□□□ -0.97
VPS39-213ENST00000570062 USP17L15C9J2P7 530 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 USP17L13C9JLJ4 530 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 USP17L11C9JVI0 530 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 USP17L18D6R9N7 530 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 USP17L22D6RA61 530 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 USP17L17D6RBQ6 530 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 USP17L19D6RCP7 530 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 USP17L20D6RJB6 530 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 CXCL11O14625 94 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 ATP2A1O14983 1001 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 TPM3P06753 285 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 COPB2P35606 906 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 SREBF1P36956 1147 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 GGCXP38435 758 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 ZNF165P49910 485 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 HIRAP54198 1017 aaPredicted RBP8.99□□□□□ -0.97
VPS39-213ENST00000570062 NLRP12P59046 1061 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 FKBP1BP68106 108 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 PPATQ06203 517 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 USP17L24Q0WX57 530 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 COG2Q14746 738 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 POSTNQ15063 836 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 Q4G0T1 1027 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 TPRNQ4KMQ1 711 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 HS1BP3Q53T59 392 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 NT5DC1Q5TFE4 455 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 KRT79Q5XKE5 535 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 KRT26Q7Z3Y9 468 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 CKAP2LQ8IYA6 745 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 SPICE1Q8N0Z3 855 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 MB21D1Q8N884 522 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 RASSF8Q8NHQ8 419 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 ERMNQ8TAM6 284 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 SYMPKQ92797 1274 aaKnown RBP8.99□□□□□ -0.97
VPS39-213ENST00000570062 SMARCE1Q969G3 411 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 TRIM44Q96DX7 344 aaPredicted RBP8.99□□□□□ -0.97
VPS39-213ENST00000570062 MBOAT7Q96N66 472 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 MTMR9Q96QG7 549 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 NT5C3AQ9H0P0 336 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 SLC38A10Q9HBR0 1119 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 DDX25Q9UHL0 483 aaKnown RBP8.99□□□□□ -0.97
VPS39-213ENST00000570062 PPP1R9AQ9ULJ8 1098 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 ZHX2Q9Y6X8 837 aa8.99□□□□□ -0.97
VPS39-213ENST00000570062 GOLGA6L6A8MZA4 724 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 MEIS2O14770 477 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 PPP1R11O60927 126 aaPredicted RBP8.98□□□□□ -0.97
VPS39-213ENST00000570062 USP2O75604 605 aaPredicted RBP8.98□□□□□ -0.97
VPS39-213ENST00000570062 FLOT1O75955 427 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 MUTP22033 750 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 INPP5BP32019 993 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 ZNF76P36508 570 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 STAT6P42226 847 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 ARHGAP4P98171 946 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 SETQ01105 290 aaPredicted RBP8.98□□□□□ -0.97
VPS39-213ENST00000570062 LONRF3Q496Y0 759 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 RRAGBQ5VZM2 374 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 HAUS3Q68CZ6 603 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 NIPA1Q7RTP0 329 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 LDHDQ86WU2 507 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 ERO1BQ86YB8 467 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 IGSF22Q8N9C0 903 aa8.98□□□□□ -0.97
VPS39-213ENST00000570062 PROCA1Q8NCQ7 364 aaPredicted RBP8.98□□□□□ -0.97
VPS39-213ENST00000570062 RASGRP4Q8TDF6 673 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms