RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PRUNE2Q8WUY3 3088 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 MYCLP12524 364 aaPredicted RBP17.35■□□□□ 0.37
VPS39-210ENST00000568357 CDK7P50613 346 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 TTLL4Q14679 1199 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 PGM5Q15124 567 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 PPP2R5BQ15173 497 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 USP17L6PQ6QN14 398 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 VSIG10LQ86VR7 867 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 IL31RAQ8NI17 732 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 ZFP91Q96JP5 570 aaPredicted RBP17.35■□□□□ 0.37
VPS39-210ENST00000568357 AGXT2Q9BYV1 514 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 ZSWIM6Q9HCJ5 1215 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 NAP1L2Q9ULW6 460 aaPredicted RBP17.35■□□□□ 0.37
VPS39-210ENST00000568357 LRRC37A2A6NM11 1700 aa17.35■□□□□ 0.37
VPS39-210ENST00000568357 DNAH12Q6ZR08 3092 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 TRIM43BA6NCK2 446 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 GOLGA8AA7E2F4 631 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 GOLGA8BA8MQT2 603 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 MEIS2O14770 477 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 NKRFO15226 690 aaKnown RBP eCLIP17.34■□□□□ 0.37
VPS39-210ENST00000568357 PQBP1O60828 265 aaKnown RBP17.34■□□□□ 0.37
VPS39-210ENST00000568357 RGS20O76081 388 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 ADD1P35611 737 aaKnown RBP17.34■□□□□ 0.37
VPS39-210ENST00000568357 LY6KQ17RY6 165 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 RUFY3Q7L099 469 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 ANKRD33Q7Z3H0 272 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 OR6J1Q8NGC5 347 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 TRIM43Q96BQ3 446 aaPredicted RBP17.34■□□□□ 0.37
VPS39-210ENST00000568357 PRDM5Q9NQX1 630 aaPredicted RBP17.34■□□□□ 0.37
VPS39-210ENST00000568357 PDLIM7Q9NR12 457 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 V9GY48 417 aaPredicted RBP17.34■□□□□ 0.37
VPS39-210ENST00000568357 MUC3AQ02505 3323 aa17.34■□□□□ 0.37
VPS39-210ENST00000568357 GRIN2DO15399 1336 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 CNTNAP5Q8WYK1 1306 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 ARVCFO00192 962 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 PIK3CDO00329 1044 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 ZEB2O60315 1214 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 ITGB8P26012 769 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 RCAN1P53805 252 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 FAAP100Q0VG06 881 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 GPKOWQ92917 476 aaPredicted RBP eCLIP17.33■□□□□ 0.36
VPS39-210ENST00000568357 TOX2Q96NM4 488 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 PSTPIP2Q9H939 334 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 PRKAG2Q9UGJ0 569 aa17.33■□□□□ 0.36
VPS39-210ENST00000568357 DDX41Q9UJV9 622 aaKnown RBP17.33■□□□□ 0.36
VPS39-210ENST00000568357 A0A0U1RQG5 324 aaPredicted RBP17.32■□□□□ 0.36
VPS39-210ENST00000568357 A6NJR5 290 aa17.32■□□□□ 0.36
VPS39-210ENST00000568357 CABYRO75952 493 aa17.32■□□□□ 0.36
VPS39-210ENST00000568357 CLTBP09497 229 aa17.32■□□□□ 0.36
VPS39-210ENST00000568357 METAP2P50579 478 aaKnown RBP eCLIP17.32■□□□□ 0.36
VPS39-210ENST00000568357 PSMC6P62333 389 aa17.32■□□□□ 0.36
VPS39-210ENST00000568357 HEATR3Q7Z4Q2 680 aa17.32■□□□□ 0.36
VPS39-210ENST00000568357 SLC43A3Q8NBI5 491 aa17.32■□□□□ 0.36
VPS39-210ENST00000568357 SMARCC2Q8TAQ2 1214 aa17.32■□□□□ 0.36
VPS39-210ENST00000568357 TM6SF1Q9BZW5 370 aa17.32■□□□□ 0.36
VPS39-210ENST00000568357 DCDC2CA8MYV0 355 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 MYL3P08590 195 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 CCND2P30279 289 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 CPT1AP50416 773 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 EVCP57679 992 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 MRPS9P82933 396 aaKnown RBP17.31■□□□□ 0.36
VPS39-210ENST00000568357 PURAQ00577 322 aaKnown RBP17.31■□□□□ 0.36
VPS39-210ENST00000568357 ARHGAP1Q07960 439 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 ITGA7Q13683 1181 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 TOB2Q14106 344 aaPredicted RBP17.31■□□□□ 0.36
VPS39-210ENST00000568357 WWC2Q6AWC2 1192 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 TYW1BQ6NUM6 668 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 MYLIPQ8WY64 445 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 CUL5Q93034 780 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 LBHD1Q9BQE6 289 aaPredicted RBP17.31■□□□□ 0.36
VPS39-210ENST00000568357 UPF3BQ9BZI7 483 aaKnown RBP17.31■□□□□ 0.36
VPS39-210ENST00000568357 CYP46A1Q9Y6A2 500 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 MRVI1Q9Y6F6 885 aa17.31■□□□□ 0.36
VPS39-210ENST00000568357 FRMPD4Q14CM0 1322 aa17.3■□□□□ 0.36
VPS39-210ENST00000568357 MYH6P13533 1939 aa17.3■□□□□ 0.36
VPS39-210ENST00000568357 KIAA0355O15063 1070 aa17.3■□□□□ 0.36
VPS39-210ENST00000568357 GH1P01241 217 aa17.3■□□□□ 0.36
VPS39-210ENST00000568357 PDIA3P30101 505 aaKnown RBP17.3■□□□□ 0.36
VPS39-210ENST00000568357 AFG1LQ8WV93 481 aa17.3■□□□□ 0.36
VPS39-210ENST00000568357 BADQ92934 168 aa17.3■□□□□ 0.36
VPS39-210ENST00000568357 LARP6Q9BRS8 491 aaKnown RBP17.3■□□□□ 0.36
VPS39-210ENST00000568357 TMEM39AQ9NV64 488 aa17.3■□□□□ 0.36
VPS39-210ENST00000568357 POLR3EQ9NVU0 708 aa17.3■□□□□ 0.36
VPS39-210ENST00000568357 CCDC196A0A1B0GTZ2 297 aa17.29■□□□□ 0.36
VPS39-210ENST00000568357 SEC24BO95487 1268 aa17.29■□□□□ 0.36
VPS39-210ENST00000568357 SP2Q02086 613 aa17.29■□□□□ 0.36
VPS39-210ENST00000568357 UBE2SQ16763 222 aa17.29■□□□□ 0.36
VPS39-210ENST00000568357 FAM126BQ8IXS8 530 aa17.29■□□□□ 0.36
VPS39-210ENST00000568357 SEMA6BQ9H3T3 888 aa17.29■□□□□ 0.36
VPS39-210ENST00000568357 RTEL1Q9NZ71 1219 aa17.29■□□□□ 0.36
VPS39-210ENST00000568357 MROH7Q68CQ1 1323 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 STXBP3O00186 592 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 PPFIA3O75145 1194 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 CD4P01730 458 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 CCT2P78371 535 aaKnown RBP17.28■□□□□ 0.36
VPS39-210ENST00000568357 NTRK3Q16288 839 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 BRDTQ58F21 947 aaPredicted RBP17.28■□□□□ 0.36
VPS39-210ENST00000568357 PPP1R13LQ8WUF5 828 aa17.28■□□□□ 0.36
VPS39-210ENST00000568357 MTG1Q9BT17 334 aaPredicted RBP17.28■□□□□ 0.36
VPS39-210ENST00000568357 TTYH1Q9H313 450 aaPredicted RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms