RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 AP3B2Q13367 1082 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 GRIPAP1Q4V328 841 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 KIAA1755Q5JYT7 1200 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 HYIQ5T013 277 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 ATRIPQ8WXE1 791 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 TUBGCP2Q9BSJ2 902 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 TMOD2Q9NZR1 351 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 CNTNAP1P78357 1384 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 A0A1W2PQC6 194 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 OPLAHO14841 1288 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 NKRFO15226 690 aaKnown RBP eCLIP22.65■■□□□ 1.22
CLN3-230ENST00000568076 DPEP1P16444 411 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 CENPPQ6IPU0 288 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 PDCL2Q8N4E4 241 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 FAM151AQ8WW52 585 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 B4DLN1 442 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 MMP14P50281 582 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 ARHGAP4P98171 946 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 DLGAP5Q15398 846 aa22.65■■□□□ 1.22
CLN3-230ENST00000568076 CNOT6LQ96LI5 555 aaKnown RBP22.65■■□□□ 1.22
CLN3-230ENST00000568076 KRT9P35527 623 aa22.64■■□□□ 1.21
CLN3-230ENST00000568076 GNG11P61952 73 aa22.64■■□□□ 1.21
CLN3-230ENST00000568076 MOXD1Q6UVY6 613 aa22.64■■□□□ 1.21
CLN3-230ENST00000568076 ACER1Q8TDN7 264 aa22.64■■□□□ 1.21
CLN3-230ENST00000568076 DNAJC19Q96DA6 116 aa22.64■■□□□ 1.21
CLN3-230ENST00000568076 SYNPO2Q9UMS6 1093 aa22.64■■□□□ 1.21
CLN3-230ENST00000568076 TTC26A0AVF1 554 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 PES1O00541 588 aaKnown RBP22.63■■□□□ 1.21
CLN3-230ENST00000568076 IDEP14735 1019 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 CDAN1Q8IWY9 1227 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 PRR12Q9ULL5 1215 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 PRKCSHP14314 528 aaPredicted RBP22.63■■□□□ 1.21
CLN3-230ENST00000568076 DNM2P50570 870 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 SPDYE2Q495Y8 402 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 MIIPQ5JXC2 388 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 TMTC1Q8IUR5 882 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 GLIS3Q8NEA6 775 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 ETNPPLQ8TBG4 499 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 KIFC2Q96AC6 838 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 IRX2Q9BZI1 471 aaPredicted RBP22.63■■□□□ 1.21
CLN3-230ENST00000568076 LRRC27Q9C0I9 530 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 HDAC9Q9UKV0 1011 aa22.63■■□□□ 1.21
CLN3-230ENST00000568076 STAT3P40763 770 aa22.62■■□□□ 1.21
CLN3-230ENST00000568076 GUF1Q8N442 669 aaKnown RBP22.62■■□□□ 1.21
CLN3-230ENST00000568076 LENG9Q96B70 501 aa22.62■■□□□ 1.21
CLN3-230ENST00000568076 ARID3AQ99856 593 aa22.62■■□□□ 1.21
CLN3-230ENST00000568076 KDM3AQ9Y4C1 1321 aa22.62■■□□□ 1.21
CLN3-230ENST00000568076 RASSF10A6NK89 507 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 E9PMD0 336 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 URI1O94763 535 aaPredicted RBP22.61■■□□□ 1.21
CLN3-230ENST00000568076 ELF2Q15723 593 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 DEFB132Q7Z7B7 95 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 FAM114A1Q8IWE2 563 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 OGFOD1Q8N543 542 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 NT5C3AQ9H0P0 336 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 LZTFL1Q9NQ48 299 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 KIAA1024Q9UPX6 916 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 TMX2Q9Y320 296 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 POTEB3A0JP26 581 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 POTECB2RU33 542 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 CASQ1P31415 396 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 SREBF1P36956 1147 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 SPIRE1Q08AE8 756 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 PRR16Q569H4 304 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 POTEBQ6S5H4 581 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 CYP26C1Q6V0L0 522 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 ACRBPQ8NEB7 543 aa22.61■■□□□ 1.21
CLN3-230ENST00000568076 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.61■■□□□ 1.21
CLN3-230ENST00000568076 FAM86B1E9PN63 330 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 MED24O75448 989 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 FAM86B2P0C5J1 330 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 HOXA13P31271 388 aaPredicted RBP22.6■■□□□ 1.21
CLN3-230ENST00000568076 KLK7P49862 253 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 COASYQ13057 564 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 Q4G0T1 1027 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 SLFN12Q8IYM2 578 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 CHP1Q99653 195 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 TTYH3Q9C0H2 523 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 TMEM39BQ9GZU3 492 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 VEZTQ9HBM0 779 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 ARHGEF10LQ9HCE6 1279 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 ZBTB21Q9ULJ3 1066 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 CAPN11Q9UMQ6 739 aa22.6■■□□□ 1.21
CLN3-230ENST00000568076 MTIF2P46199 727 aaKnown RBP22.59■■□□□ 1.21
CLN3-230ENST00000568076 STAT2P52630 851 aa22.59■■□□□ 1.21
CLN3-230ENST00000568076 PSMD2Q13200 908 aa22.59■■□□□ 1.21
CLN3-230ENST00000568076 LRRC41Q15345 812 aa22.59■■□□□ 1.21
CLN3-230ENST00000568076 MCTP2Q6DN12 878 aa22.59■■□□□ 1.21
CLN3-230ENST00000568076 DNAJC7Q99615 494 aa22.59■■□□□ 1.21
CLN3-230ENST00000568076 SPDYE3A6NKU9 549 aa22.59■■□□□ 1.21
CLN3-230ENST00000568076 FOSP01100 380 aaPredicted RBP22.59■■□□□ 1.21
CLN3-230ENST00000568076 TBC1D8BQ0IIM8 1120 aa22.59■■□□□ 1.21
CLN3-230ENST00000568076 FAM83BQ5T0W9 1011 aa22.59■■□□□ 1.21
CLN3-230ENST00000568076 OR8K1Q8NGG5 319 aa22.59■■□□□ 1.21
CLN3-230ENST00000568076 NOC4LQ9BVI4 516 aaKnown RBP22.59■■□□□ 1.21
CLN3-230ENST00000568076 SSBP05455 408 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLN3-230ENST00000568076 PLA2G4BP0C869 781 aa22.58■■□□□ 1.21
CLN3-230ENST00000568076 ZNRF3Q9ULT6 936 aa22.58■■□□□ 1.21
CLN3-230ENST00000568076 LUC7L2Q9Y383 392 aaKnown RBP22.58■■□□□ 1.21
CLN3-230ENST00000568076 TBX3O15119 743 aa22.58■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms