RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 NR1D1P20393 614 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 MDH1P40925 334 aaKnown RBP17.35■□□□□ 0.37
COMMD4-215ENST00000566843 SETQ01105 290 aaPredicted RBP17.35■□□□□ 0.37
COMMD4-215ENST00000566843 MAN2A1Q16706 1144 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 CCDC178Q5BJE1 867 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 GALNT17Q6IS24 598 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 CNNM4Q6P4Q7 775 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 PDXDC1Q6P996 788 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 ARHGAP27Q6ZUM4 889 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 CCDC84Q86UT8 332 aaPredicted RBP17.35■□□□□ 0.37
COMMD4-215ENST00000566843 DZIP3Q86Y13 1208 aaKnown RBP17.35■□□□□ 0.37
COMMD4-215ENST00000566843 WHAMMQ8TF30 809 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 ATP6V1G3Q96LB4 118 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 PSMB7Q99436 277 aa17.35■□□□□ 0.37
COMMD4-215ENST00000566843 ITGB4P16144 1822 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 LRRC53A6NM62 1247 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 HMGB1P1B2RPK0 211 aaPredicted RBP17.34■□□□□ 0.37
COMMD4-215ENST00000566843 KCNQ2O43526 872 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 HEXIM1O94992 359 aaKnown RBP17.34■□□□□ 0.37
COMMD4-215ENST00000566843 IGHMBP2P38935 993 aaKnown RBP17.34■□□□□ 0.37
COMMD4-215ENST00000566843 ASIC1P78348 528 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 GUCY1A3Q02108 690 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 CHRNDQ07001 517 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 SUSD4Q5VX71 490 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 RCSD1Q6JBY9 416 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 C6orf89Q6UWU4 347 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 NLRP14Q86W24 1093 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 GPATCH11Q8N954 259 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 KIAA0895Q8NCT3 520 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 VCPKMTQ9H867 229 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 EPB41L5Q9HCM4 733 aa17.34■□□□□ 0.37
COMMD4-215ENST00000566843 ACTN3Q08043 901 aaPredicted RBP17.33■□□□□ 0.37
COMMD4-215ENST00000566843 DRP2Q13474 957 aa17.33■□□□□ 0.37
COMMD4-215ENST00000566843 PPP4R3AQ6IN85 833 aa17.33■□□□□ 0.37
COMMD4-215ENST00000566843 MYCBPAPQ8TBZ2 947 aa17.33■□□□□ 0.37
COMMD4-215ENST00000566843 GPKOWQ92917 476 aaPredicted RBP eCLIP17.33■□□□□ 0.37
COMMD4-215ENST00000566843 MS4A14Q96JA4 679 aa17.33■□□□□ 0.37
COMMD4-215ENST00000566843 CCT8L2Q96SF2 557 aa17.33■□□□□ 0.37
COMMD4-215ENST00000566843 TACO1Q9BSH4 297 aaKnown RBP17.33■□□□□ 0.37
COMMD4-215ENST00000566843 FAM207AQ9NSI2 230 aaPredicted RBP17.33■□□□□ 0.37
COMMD4-215ENST00000566843 DOT1LQ8TEK3 1739 aa17.33■□□□□ 0.37
COMMD4-215ENST00000566843 ATP6V1AP38606 617 aa17.33■□□□□ 0.36
COMMD4-215ENST00000566843 HSPA9P38646 679 aaKnown RBP17.33■□□□□ 0.36
COMMD4-215ENST00000566843 IL6STP40189 918 aaPredicted RBP17.33■□□□□ 0.36
COMMD4-215ENST00000566843 MMP14P50281 582 aa17.33■□□□□ 0.36
COMMD4-215ENST00000566843 SMTNP53814 917 aa17.33■□□□□ 0.36
COMMD4-215ENST00000566843 INF2Q27J81 1249 aa17.33■□□□□ 0.36
COMMD4-215ENST00000566843 CCDC152Q4G0S7 254 aa17.33■□□□□ 0.36
COMMD4-215ENST00000566843 FAM47AQ5JRC9 791 aa17.33■□□□□ 0.36
COMMD4-215ENST00000566843 RRAGAQ7L523 313 aa17.33■□□□□ 0.36
COMMD4-215ENST00000566843 ZNF384Q8TF68 577 aa17.33■□□□□ 0.36
COMMD4-215ENST00000566843 CASKIN2Q8WXE0 1202 aa17.33■□□□□ 0.36
COMMD4-215ENST00000566843 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.33■□□□□ 0.36
COMMD4-215ENST00000566843 H0YHG0 523 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 FAM107AO95990 144 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 MYBP10242 640 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 AMPD3Q01432 767 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 GUCY2DQ02846 1103 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 ITGB3BPQ13352 177 aaPredicted RBP17.32■□□□□ 0.36
COMMD4-215ENST00000566843 HGSNATQ68CP4 663 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 EIF1ADQ8N9N8 165 aaKnown RBP17.32■□□□□ 0.36
COMMD4-215ENST00000566843 MMRN2Q9H8L6 949 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 TCP11L1Q9NUJ3 509 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 RASSF7Q02833 373 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 EVX2Q03828 476 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 CDC37Q16543 378 aaPredicted RBP17.32■□□□□ 0.36
COMMD4-215ENST00000566843 TXNRD1Q16881 649 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 LRIG3Q6UXM1 1119 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 C3orf20Q8ND61 904 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 TMBIM4Q9HC24 238 aa17.32■□□□□ 0.36
COMMD4-215ENST00000566843 CASZ1Q86V15 1759 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 RASSF9O75901 435 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 FGFR1OPO95684 399 aaKnown RBP17.31■□□□□ 0.36
COMMD4-215ENST00000566843 SLC1A4P43007 532 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 GFPT1Q06210 699 aaPredicted RBP17.31■□□□□ 0.36
COMMD4-215ENST00000566843 SBK1Q52WX2 424 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 ANKRD13CQ8N6S4 541 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 ANKS1AQ92625 1134 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 KIAA1551Q9HCM1 1747 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 ZSCAN5CA6NGD5 496 aaPredicted RBP17.31■□□□□ 0.36
COMMD4-215ENST00000566843 CHUKO15111 745 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 OR52Z1P0C646 297 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 GRM4Q14833 912 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 SEPT12Q8IYM1 358 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 IFT81Q8WYA0 676 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 SYN2Q92777 582 aaPredicted RBP17.31■□□□□ 0.36
COMMD4-215ENST00000566843 INPP4AQ96PE3 977 aaPredicted RBP17.31■□□□□ 0.36
COMMD4-215ENST00000566843 PLCB1Q9NQ66 1216 aa17.31■□□□□ 0.36
COMMD4-215ENST00000566843 LAMB2P55268 1798 aa17.3■□□□□ 0.36
COMMD4-215ENST00000566843 BUB1O43683 1085 aa17.3■□□□□ 0.36
COMMD4-215ENST00000566843 HOXA7P31268 230 aaPredicted RBP17.3■□□□□ 0.36
COMMD4-215ENST00000566843 HDLBPQ00341 1268 aaKnown RBP17.3■□□□□ 0.36
COMMD4-215ENST00000566843 NAB2Q15742 525 aa17.3■□□□□ 0.36
COMMD4-215ENST00000566843 FOXR2Q6PJQ5 311 aa17.3■□□□□ 0.36
COMMD4-215ENST00000566843 PTF1AQ7RTS3 328 aa17.3■□□□□ 0.36
COMMD4-215ENST00000566843 DCP1AQ9NPI6 582 aaPredicted RBP17.3■□□□□ 0.36
COMMD4-215ENST00000566843 ESYT3A0FGR9 886 aa17.3■□□□□ 0.36
COMMD4-215ENST00000566843 STXBP3O00186 592 aa17.3■□□□□ 0.36
COMMD4-215ENST00000566843 GNAQP50148 359 aa17.3■□□□□ 0.36
COMMD4-215ENST00000566843 MEI1Q5TIA1 1274 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms