RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 FAM184BQ9ULE4 1060 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 NAP1L2Q9ULW6 460 aaPredicted RBP11.35□□□□□ -0.59
CLN3-220ENST00000566040 PTPRSQ13332 1948 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 STK36Q9NRP7 1315 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 A0A1W2PQ45 241 aaPredicted RBP11.34□□□□□ -0.59
CLN3-220ENST00000566040 A0A1W2PQY0 241 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 JAK2O60674 1132 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 RARBP10826 455 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 FGD1P98174 961 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 TNFAIP2Q03169 654 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 PDE4DQ08499 809 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 TLK2Q86UE8 772 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 RASGRP4Q8TDF6 673 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 SLC26A6Q9BXS9 759 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 WDR11Q9BZH6 1224 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 C11orf49Q9H6J7 331 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 VPS54Q9P1Q0 977 aa11.34□□□□□ -0.59
CLN3-220ENST00000566040 DDX41Q9UJV9 622 aaKnown RBP11.34□□□□□ -0.59
CLN3-220ENST00000566040 hCG_1984214I3L0E3 225 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 HOXD8P13378 290 aaPredicted RBP11.33□□□□□ -0.6
CLN3-220ENST00000566040 CAPN2P17655 700 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 ITGB5P18084 799 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 ACLYP53396 1101 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 NAPAP54920 295 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 LY6KQ17RY6 165 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 ARHGEF16Q5VV41 709 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 PCNX4Q63HM2 1172 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 IQSEC1Q6DN90 963 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 NECAB2Q7Z6G3 386 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 ZNF713Q8N859 430 aaPredicted RBP11.33□□□□□ -0.6
CLN3-220ENST00000566040 PSTPIP2Q9H939 334 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 UBIAD1Q9Y5Z9 338 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 MYH15Q9Y2K3 1946 aa11.33□□□□□ -0.6
CLN3-220ENST00000566040 ARID2Q68CP9 1835 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 TRIOBPQ9H2D6 2365 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 SZT2Q5T011 3432 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 IGLV3-22A0A075B6J6 115 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 CCDC196A0A1B0GTZ2 297 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 SMCO2A6NFE2 343 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 EIF3JO75822 258 aaKnown RBP11.32□□□□□ -0.6
CLN3-220ENST00000566040 MYCLP12524 364 aaPredicted RBP11.32□□□□□ -0.6
CLN3-220ENST00000566040 UBA1P22314 1058 aaKnown RBP11.32□□□□□ -0.6
CLN3-220ENST00000566040 ICAM3P32942 547 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 SREBF1P36956 1147 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 ADCY7P51828 1080 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 STXBP2Q15833 593 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 KCNA10Q16322 511 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 SEPT14Q6ZU15 432 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 SLC43A3Q8NBI5 491 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 SMARCC2Q8TAQ2 1214 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 CYP2W1Q8TAV3 490 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 SCFD2Q8WU76 684 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 FERMT2Q96AC1 680 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 LENG9Q96B70 501 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 ANO3Q9BYT9 981 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 PRO3102Q9H379 93 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 PCDHA6Q9UN73 950 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 Q9Y3F1 56 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 PCDHA8Q9Y5H6 950 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 LOXHD1Q8IVV2 1947 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 MYH9P35579 1960 aaKnown RBP11.32□□□□□ -0.6
CLN3-220ENST00000566040 GBF1Q92538 1859 aa11.32□□□□□ -0.6
CLN3-220ENST00000566040 FAM205CA6NFA0 338 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 A6NJR5 290 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 SPATA31C2B4DYI2 1134 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 ATP9AO75110 1047 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 ASGR1P07306 291 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 C6orf222P0C671 652 aaPredicted RBP11.31□□□□□ -0.6
CLN3-220ENST00000566040 CCND2P30279 289 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 CDK7P50613 346 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 TRAF1Q13077 416 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 FSCN1Q16658 493 aaKnown RBP11.31□□□□□ -0.6
CLN3-220ENST00000566040 EARS2Q5JPH6 523 aaKnown RBP11.31□□□□□ -0.6
CLN3-220ENST00000566040 C1orf53Q5VUE5 145 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 SLC39A5Q6ZMH5 540 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 DAGLBQ8NCG7 672 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 ARRDC4Q8NCT1 418 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 TET1Q8NFU7 2136 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 OXER1Q8TDS5 423 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 PPP1R13LQ8WUF5 828 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 KAT2BQ92831 832 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 CUL5Q93034 780 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 TNFRSF25Q93038 417 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 EMID1Q96A84 441 aaPredicted RBP11.31□□□□□ -0.6
CLN3-220ENST00000566040 CTAGE1Q96RT6 745 aa11.31□□□□□ -0.6
CLN3-220ENST00000566040 TSEN34Q9BSV6 310 aaKnown RBP11.31□□□□□ -0.6
CLN3-220ENST00000566040 SENP6Q9GZR1 1112 aaPredicted RBP11.31□□□□□ -0.6
CLN3-220ENST00000566040 CHD9Q3L8U1 2897 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 FAM86B1E9PN63 330 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 WNT7AO00755 349 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 DYNC1LI2O43237 492 aaPredicted RBP11.3□□□□□ -0.6
CLN3-220ENST00000566040 DEXIO95424 95 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 MMP3P08254 477 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 FAM86B2P0C5J1 330 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 TXNP10599 105 aaKnown RBP11.3□□□□□ -0.6
CLN3-220ENST00000566040 KCNA2P16389 499 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 ITGB8P26012 769 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 ATN1P54259 1190 aaPredicted RBP11.3□□□□□ -0.6
CLN3-220ENST00000566040 RTP1P59025 263 aa11.3□□□□□ -0.6
CLN3-220ENST00000566040 PURAQ00577 322 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms