RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 MSL3Q8N5Y2 521 aaKnown RBP19.85■□□□□ 0.77
CLN3-217ENST00000565354 FAM133AQ8N9E0 248 aa19.85■□□□□ 0.77
CLN3-217ENST00000565354 RGS22Q8NE09 1264 aa19.85■□□□□ 0.77
CLN3-217ENST00000565354 ATXN2LQ8WWM7 1075 aaKnown RBP19.85■□□□□ 0.77
CLN3-217ENST00000565354 CUL5Q93034 780 aa19.85■□□□□ 0.77
CLN3-217ENST00000565354 SLC26A6Q9BXS9 759 aa19.85■□□□□ 0.77
CLN3-217ENST00000565354 MAF1Q9H063 256 aa19.85■□□□□ 0.77
CLN3-217ENST00000565354 MROH7Q68CQ1 1323 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 ASB14A6NK59 587 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 B4DLN1 442 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 CDKL5O76039 1030 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 MRPL12P52815 198 aaKnown RBP19.84■□□□□ 0.77
CLN3-217ENST00000565354 SSRP1Q08945 709 aaKnown RBP19.84■□□□□ 0.77
CLN3-217ENST00000565354 PPIGQ13427 754 aaKnown RBP eCLIP19.84■□□□□ 0.778e-7■□□□□ 10.3
CLN3-217ENST00000565354 TMEM240Q5SV17 173 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 RASIP1Q5U651 963 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 C16orf59Q7L2K0 433 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 SAMD3Q8N6K7 520 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 PPM1EQ8WY54 764 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 PHKBQ93100 1093 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 KIF2CQ99661 725 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 PBX4Q9BYU1 374 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 FAM184BQ9ULE4 1060 aa19.84■□□□□ 0.77
CLN3-217ENST00000565354 ELP1O95163 1332 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 SYNGAP1Q96PV0 1343 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 SOWAHBA6NEL2 793 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 GCOM1H8Y6P7 765 aaPredicted RBP19.83■□□□□ 0.77
CLN3-217ENST00000565354 hCG_1984214I3L0E3 225 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 PFKFB2O60825 505 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 POLR2MP0CAP2 368 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 IFNAR1P17181 557 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 PBX2P40425 430 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 NAPAP54920 295 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 FUT2Q10981 343 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 SCRN1Q12765 414 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 ZNF713Q8N859 430 aaPredicted RBP19.83■□□□□ 0.77
CLN3-217ENST00000565354 SMARCC2Q8TAQ2 1214 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 TBC1D5Q92609 795 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 GPKOWQ92917 476 aaPredicted RBP eCLIP19.83■□□□□ 0.77
CLN3-217ENST00000565354 GLT1D1Q96MS3 346 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 RNF26Q9BY78 433 aaPredicted RBP19.83■□□□□ 0.77
CLN3-217ENST00000565354 PRDM12Q9H4Q4 367 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 THEGQ9P2T0 379 aa19.83■□□□□ 0.77
CLN3-217ENST00000565354 CHD7Q9P2D1 2997 aa19.83■□□□□ 0.76
CLN3-217ENST00000565354 GBF1Q92538 1859 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 MYADML2A6NDP7 307 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 GRXCR1A8MXD5 290 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 PRPF3O43395 683 aaKnown RBP19.82■□□□□ 0.76
CLN3-217ENST00000565354 PPFIA3O75145 1194 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 DUSP11O75319 330 aaKnown RBP19.82■□□□□ 0.76
CLN3-217ENST00000565354 SNAI1O95863 264 aaPredicted RBP19.82■□□□□ 0.76
CLN3-217ENST00000565354 CST5P28325 142 aaPredicted RBP19.82■□□□□ 0.76
CLN3-217ENST00000565354 CDK7P50613 346 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 MAMDC4Q6UXC1 1216 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 ARMCX2Q7L311 632 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 IL27Q8NEV9 243 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 SYTL5Q8TDW5 730 aaPredicted RBP19.82■□□□□ 0.76
CLN3-217ENST00000565354 ASB2Q96Q27 587 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 PURBQ96QR8 312 aaKnown RBP19.82■□□□□ 0.76
CLN3-217ENST00000565354 MAP3K20Q9NYL2 800 aaKnown RBP19.82■□□□□ 0.76
CLN3-217ENST00000565354 LIMCH1Q9UPQ0 1083 aa19.82■□□□□ 0.76
CLN3-217ENST00000565354 SCG2P13521 617 aa19.81■□□□□ 0.76
CLN3-217ENST00000565354 CSF2RAP15509 400 aa19.81■□□□□ 0.76
CLN3-217ENST00000565354 ALDH5A1P51649 535 aaPredicted RBP19.81■□□□□ 0.76
CLN3-217ENST00000565354 NTRK3Q16288 839 aa19.81■□□□□ 0.76
CLN3-217ENST00000565354 ME3Q16798 604 aa19.81■□□□□ 0.76
CLN3-217ENST00000565354 PFKFB3Q16875 520 aaPredicted RBP19.81■□□□□ 0.76
CLN3-217ENST00000565354 WWC2Q6AWC2 1192 aa19.81■□□□□ 0.76
CLN3-217ENST00000565354 TMEM199Q8N511 208 aa19.81■□□□□ 0.76
CLN3-217ENST00000565354 NECAB1Q8N987 351 aa19.81■□□□□ 0.76
CLN3-217ENST00000565354 DNERQ8NFT8 737 aa19.81■□□□□ 0.76
CLN3-217ENST00000565354 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.81■□□□□ 0.76
CLN3-217ENST00000565354 RAPGEFL1Q9UHV5 662 aa19.81■□□□□ 0.76
CLN3-217ENST00000565354 ZHX1Q9UKY1 873 aaPredicted RBP19.81■□□□□ 0.76
CLN3-217ENST00000565354 OPLAHO14841 1288 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 HOXA13P31271 388 aaPredicted RBP19.8■□□□□ 0.76
CLN3-217ENST00000565354 HSD17B4P51659 736 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 PDE4DQ08499 809 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 ARHGEF16Q5VV41 709 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 PPP1R18Q6NYC8 613 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 PSRC1Q6PGN9 363 aaPredicted RBP19.8■□□□□ 0.76
CLN3-217ENST00000565354 ZNF365Q70YC5 407 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 FCHSD1Q86WN1 690 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 PCSK9Q8NBP7 692 aaKnown RBP19.8■□□□□ 0.76
CLN3-217ENST00000565354 ADAMTS19Q8TE59 1207 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 CCDC12Q8WUD4 166 aaPredicted RBP19.8■□□□□ 0.76
CLN3-217ENST00000565354 ZSCAN31Q96LW9 406 aaPredicted RBP19.8■□□□□ 0.76
CLN3-217ENST00000565354 FGD4Q96M96 766 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 TAAR1Q96RJ0 339 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 RMDN3Q96TC7 470 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 PSTPIP2Q9H939 334 aa19.8■□□□□ 0.76
CLN3-217ENST00000565354 LOC102724159A0A0B4J2E5 919 aa19.79■□□□□ 0.76
CLN3-217ENST00000565354 LARGE1O95461 756 aa19.79■□□□□ 0.76
CLN3-217ENST00000565354 ASGR1P07306 291 aa19.79■□□□□ 0.76
CLN3-217ENST00000565354 C6orf222P0C671 652 aaPredicted RBP19.79■□□□□ 0.76
CLN3-217ENST00000565354 IRX5P78411 483 aaPredicted RBP19.79■□□□□ 0.76
CLN3-217ENST00000565354 MRPS5P82675 430 aaKnown RBP19.79■□□□□ 0.76
CLN3-217ENST00000565354 ADGRE1Q14246 886 aa19.79■□□□□ 0.76
CLN3-217ENST00000565354 PWP2Q15269 919 aaKnown RBP19.79■□□□□ 0.76
CLN3-217ENST00000565354 NSUN6Q8TEA1 469 aaKnown RBP19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms