RNA–Protein interactions for RNA: ENST00000562874.2

SF3B3-203, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-203ENST00000562874 FCHSD1Q86WN1 690 aa18.25■□□□□ 0.51
SF3B3-203ENST00000562874 SLC17A8Q8NDX2 589 aa18.25■□□□□ 0.51
SF3B3-203ENST00000562874 PDCD2LQ9BRP1 358 aa18.25■□□□□ 0.51
SF3B3-203ENST00000562874 LRRC2Q9BYS8 371 aa18.25■□□□□ 0.51
SF3B3-203ENST00000562874 IL23AQ9NPF7 189 aa18.25■□□□□ 0.51
SF3B3-203ENST00000562874 LOXHD1Q8IVV2 1947 aa18.25■□□□□ 0.51
SF3B3-203ENST00000562874 RBAK-RBAKDNI3L0D1 243 aa18.24■□□□□ 0.51
SF3B3-203ENST00000562874 SH2B2O14492 632 aaPredicted RBP18.24■□□□□ 0.51
SF3B3-203ENST00000562874 DNAJB2P25686 324 aa18.24■□□□□ 0.51
SF3B3-203ENST00000562874 GHRHRQ02643 423 aa18.24■□□□□ 0.51
SF3B3-203ENST00000562874 CREB3L3Q68CJ9 461 aa18.24■□□□□ 0.51
SF3B3-203ENST00000562874 MYLIPQ8WY64 445 aa18.24■□□□□ 0.51
SF3B3-203ENST00000562874 IWS1Q96ST2 819 aa18.24■□□□□ 0.51
SF3B3-203ENST00000562874 CDX2Q99626 313 aaPredicted RBP18.24■□□□□ 0.51
SF3B3-203ENST00000562874 CXXC1Q9P0U4 656 aaPredicted RBP18.24■□□□□ 0.51
SF3B3-203ENST00000562874 MRVI1Q9Y6F6 885 aa18.24■□□□□ 0.51
SF3B3-203ENST00000562874 WDR81Q562E7 1941 aa18.23■□□□□ 0.51
SF3B3-203ENST00000562874 PLEKHA8P1O95397 391 aa18.23■□□□□ 0.51
SF3B3-203ENST00000562874 ZNF286BP0CG31 522 aa18.23■□□□□ 0.51
SF3B3-203ENST00000562874 PBX2P40425 430 aa18.23■□□□□ 0.51
SF3B3-203ENST00000562874 PGM5Q15124 567 aa18.23■□□□□ 0.51
SF3B3-203ENST00000562874 NFXL1Q6ZNB6 911 aa18.23■□□□□ 0.51
SF3B3-203ENST00000562874 OTOP2Q7RTS6 562 aa18.23■□□□□ 0.51
SF3B3-203ENST00000562874 CMTR1Q8N1G2 835 aaKnown RBP18.23■□□□□ 0.51
SF3B3-203ENST00000562874 CTCFLQ8NI51 663 aaPredicted RBP18.23■□□□□ 0.51
SF3B3-203ENST00000562874 MAF1Q9H063 256 aa18.23■□□□□ 0.51
SF3B3-203ENST00000562874 SEMA6BQ9H3T3 888 aa18.23■□□□□ 0.51
SF3B3-203ENST00000562874 PNMA6FA0A0J9YX94 578 aa18.22■□□□□ 0.51
SF3B3-203ENST00000562874 GCOM1H8Y6P7 765 aaPredicted RBP18.22■□□□□ 0.51
SF3B3-203ENST00000562874 RGS20O76081 388 aa18.22■□□□□ 0.51
SF3B3-203ENST00000562874 DDAH1O94760 285 aa18.22■□□□□ 0.51
SF3B3-203ENST00000562874 POLR2MP0CAP2 368 aa18.22■□□□□ 0.51
SF3B3-203ENST00000562874 MCM5P33992 734 aa18.22■□□□□ 0.51
SF3B3-203ENST00000562874 BMP2KLQ5H9B9 411 aa18.22■□□□□ 0.51
SF3B3-203ENST00000562874 GPKOWQ92917 476 aaPredicted RBP eCLIP18.22■□□□□ 0.51
SF3B3-203ENST00000562874 SEZ6LQ9BYH1 1024 aa18.22■□□□□ 0.51
SF3B3-203ENST00000562874 DDX41Q9UJV9 622 aaKnown RBP18.22■□□□□ 0.51
SF3B3-203ENST00000562874 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.21■□□□□ 0.51
SF3B3-203ENST00000562874 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.21■□□□□ 0.51
SF3B3-203ENST00000562874 CCDC69A6NI79 296 aa18.21■□□□□ 0.51
SF3B3-203ENST00000562874 EIF3JO75822 258 aaKnown RBP18.21■□□□□ 0.51
SF3B3-203ENST00000562874 NECTIN1Q15223 517 aa18.21■□□□□ 0.51
SF3B3-203ENST00000562874 RASIP1Q5U651 963 aa18.21■□□□□ 0.51
SF3B3-203ENST00000562874 DEFB128Q7Z7B8 93 aa18.21■□□□□ 0.51
SF3B3-203ENST00000562874 PBX4Q9BYU1 374 aa18.21■□□□□ 0.51
SF3B3-203ENST00000562874 KPNA6O60684 536 aa18.2■□□□□ 0.5
SF3B3-203ENST00000562874 NFRKBQ6P4R8 1299 aa18.2■□□□□ 0.5
SF3B3-203ENST00000562874 KAT2BQ92831 832 aa18.2■□□□□ 0.5
SF3B3-203ENST00000562874 TIFAQ96CG3 184 aa18.2■□□□□ 0.5
SF3B3-203ENST00000562874 VWCEQ96DN2 955 aa18.2■□□□□ 0.5
SF3B3-203ENST00000562874 TCEANC2Q96MN5 208 aa18.2■□□□□ 0.5
SF3B3-203ENST00000562874 SPZ1Q9BXG8 430 aa18.2■□□□□ 0.5
SF3B3-203ENST00000562874 NOD1Q9Y239 953 aa18.2■□□□□ 0.5
SF3B3-203ENST00000562874 hCG_1642624A0A1W2PR95 340 aa18.19■□□□□ 0.5
SF3B3-203ENST00000562874 ZBBXA8MT70 800 aa18.19■□□□□ 0.5
SF3B3-203ENST00000562874 FGBP02675 491 aa18.19■□□□□ 0.5
SF3B3-203ENST00000562874 SUPT20HL2P0C7V6 817 aa18.19■□□□□ 0.5
SF3B3-203ENST00000562874 UBA1P22314 1058 aaKnown RBP18.19■□□□□ 0.5
SF3B3-203ENST00000562874 CCND2P30279 289 aa18.19■□□□□ 0.5
SF3B3-203ENST00000562874 GDF6Q6KF10 455 aaPredicted RBP18.19■□□□□ 0.5
SF3B3-203ENST00000562874 MICU3Q86XE3 530 aa18.19■□□□□ 0.5
SF3B3-203ENST00000562874 DHX37Q8IY37 1157 aaKnown RBP18.19■□□□□ 0.5
SF3B3-203ENST00000562874 SRBD1Q8N5C6 995 aaKnown RBP18.19■□□□□ 0.5
SF3B3-203ENST00000562874 HERVK_113Q902F9 699 aa18.19■□□□□ 0.5
SF3B3-203ENST00000562874 RRP36Q96EU6 259 aaKnown RBP18.19■□□□□ 0.5
SF3B3-203ENST00000562874 TMEM87BQ96K49 555 aa18.19■□□□□ 0.5
SF3B3-203ENST00000562874 ALG1Q9BT22 464 aa18.19■□□□□ 0.5
SF3B3-203ENST00000562874 NLRC5Q86WI3 1866 aa18.18■□□□□ 0.5
SF3B3-203ENST00000562874 GGPS1O95749 300 aa18.18■□□□□ 0.5
SF3B3-203ENST00000562874 FOSL2P15408 326 aa18.18■□□□□ 0.5
SF3B3-203ENST00000562874 CASTP20810 708 aaKnown RBP18.18■□□□□ 0.5
SF3B3-203ENST00000562874 KIF5BP33176 963 aa18.18■□□□□ 0.5
SF3B3-203ENST00000562874 GRIN2CQ14957 1233 aa18.18■□□□□ 0.5
SF3B3-203ENST00000562874 PTGISQ16647 500 aa18.18■□□□□ 0.5
SF3B3-203ENST00000562874 MAP3K20Q9NYL2 800 aaKnown RBP18.18■□□□□ 0.5
SF3B3-203ENST00000562874 SEC63Q9UGP8 760 aaKnown RBP18.18■□□□□ 0.5
SF3B3-203ENST00000562874 FRMPD4Q14CM0 1322 aa18.18■□□□□ 0.5
SF3B3-203ENST00000562874 UNC80Q8N2C7 3258 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 TMEM265A0A087WTH1 108 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 CDC45O75419 566 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 PSEN2P49810 448 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 SP2Q02086 613 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 TRAF1Q13077 416 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 DGKDQ16760 1214 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 HSDL1Q3SXM5 330 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 USP17L6PQ6QN14 398 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 VSIG10LQ86VR7 867 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 CCDC82Q8N4S0 544 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 MAFAQ8NHW3 353 aaPredicted RBP18.17■□□□□ 0.5
SF3B3-203ENST00000562874 PPTC7Q8NI37 304 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 EMID1Q96A84 441 aaPredicted RBP18.17■□□□□ 0.5
SF3B3-203ENST00000562874 CTAGE1Q96RT6 745 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 MAP3K14Q99558 947 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 MTIF3Q9H2K0 278 aaKnown RBP18.17■□□□□ 0.5
SF3B3-203ENST00000562874 ZNF576Q9H609 170 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 BCAS3Q9H6U6 928 aa18.17■□□□□ 0.5
SF3B3-203ENST00000562874 F2P00734 622 aa18.16■□□□□ 0.5
SF3B3-203ENST00000562874 RABGGTBP53611 331 aa18.16■□□□□ 0.5
SF3B3-203ENST00000562874 MRPS9P82933 396 aaKnown RBP18.16■□□□□ 0.5
SF3B3-203ENST00000562874 PTPN11Q06124 597 aaPredicted RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms