RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 NOC4LQ9BVI4 516 aaKnown RBP11.93□□□□□ -0.5
CLK3-205ENST00000561673 SEMA6BQ9H3T3 888 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 ANO2Q9NQ90 1003 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 DDX41Q9UJV9 622 aaKnown RBP11.93□□□□□ -0.5
CLK3-205ENST00000561673 PRUNE2Q8WUY3 3088 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.92□□□□□ -0.5
CLK3-205ENST00000561673 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.92□□□□□ -0.5
CLK3-205ENST00000561673 GCOM1H8Y6P7 765 aaPredicted RBP11.92□□□□□ -0.5
CLK3-205ENST00000561673 RGS20O76081 388 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 GH1P01241 217 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 SUPT20HL2P0C7V6 817 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 POLR2MP0CAP2 368 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 CYP2C9P11712 490 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 MYCLP12524 364 aaPredicted RBP11.92□□□□□ -0.5
CLK3-205ENST00000561673 CCL23P55773 120 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 ARHGAP1Q07960 439 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 TRAF1Q13077 416 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 RASIP1Q5U651 963 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 NFRKBQ6P4R8 1299 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 VSIG10LQ86VR7 867 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 TMTC2Q8N394 836 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 TTYH1Q9H313 450 aaPredicted RBP11.92□□□□□ -0.5
CLK3-205ENST00000561673 IL23AQ9NPF7 189 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 CHD9Q3L8U1 2897 aa11.92□□□□□ -0.5
CLK3-205ENST00000561673 SH2B2O14492 632 aaPredicted RBP11.91□□□□□ -0.5
CLK3-205ENST00000561673 DDAH1O94760 285 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 MMP3P08254 477 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 KIF5BP33176 963 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 LIFRP42702 1097 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 PGM5Q15124 567 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 FAM47CQ5HY64 1035 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 NFXL1Q6ZNB6 911 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 FCHSD1Q86WN1 690 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 SLC17A8Q8NDX2 589 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 IL31RAQ8NI17 732 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 CTCFLQ8NI51 663 aaPredicted RBP11.91□□□□□ -0.5
CLK3-205ENST00000561673 VWCEQ96DN2 955 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 TMEM87BQ96K49 555 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 CDX2Q99626 313 aaPredicted RBP11.91□□□□□ -0.5
CLK3-205ENST00000561673 SPZ1Q9BXG8 430 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 LRRC2Q9BYS8 371 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 WNT8AQ9H1J5 351 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 MRVI1Q9Y6F6 885 aa11.91□□□□□ -0.5
CLK3-205ENST00000561673 CCDC69A6NI79 296 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 FGBP02675 491 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 RXRAP19793 462 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 SMARCA1P28370 1054 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 CHMP4BP1P59074 171 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 SP2Q02086 613 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 LAMC2Q13753 1193 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 DGKDQ16760 1214 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 PSRC1Q6PGN9 363 aaPredicted RBP11.9□□□□□ -0.5
CLK3-205ENST00000561673 CMTR1Q8N1G2 835 aaKnown RBP11.9□□□□□ -0.5
CLK3-205ENST00000561673 SRBD1Q8N5C6 995 aaKnown RBP11.9□□□□□ -0.5
CLK3-205ENST00000561673 HERVK_113Q902F9 699 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 KAT2BQ92831 832 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 EMID1Q96A84 441 aaPredicted RBP11.9□□□□□ -0.5
CLK3-205ENST00000561673 RRP36Q96EU6 259 aaKnown RBP11.9□□□□□ -0.5
CLK3-205ENST00000561673 SCLYQ96I15 445 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 ZFP91Q96JP5 570 aaPredicted RBP11.9□□□□□ -0.5
CLK3-205ENST00000561673 LZTS2Q9BRK4 669 aa11.9□□□□□ -0.5
CLK3-205ENST00000561673 CXXC1Q9P0U4 656 aaPredicted RBP11.9□□□□□ -0.5
CLK3-205ENST00000561673 GRXCR1A8MXD5 290 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 PLEKHA8P1O95397 391 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 CASTP20810 708 aaKnown RBP11.89□□□□□ -0.51
CLK3-205ENST00000561673 DNAJB2P25686 324 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 CCND2P30279 289 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 GNAQP50148 359 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 PTPN11Q06124 597 aaPredicted RBP11.89□□□□□ -0.51
CLK3-205ENST00000561673 CELF3Q5SZQ8 465 aaKnown RBP11.89□□□□□ -0.51
CLK3-205ENST00000561673 MYSM1Q5VVJ2 828 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 KCNV1Q6PIU1 500 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 OTOP2Q7RTS6 562 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 RAB11FIP4Q86YS3 637 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 DHX37Q8IY37 1157 aaKnown RBP11.89□□□□□ -0.51
CLK3-205ENST00000561673 RPUSD2Q8IZ73 545 aaKnown RBP11.89□□□□□ -0.51
CLK3-205ENST00000561673 PPTC7Q8NI37 304 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 GPKOWQ92917 476 aaPredicted RBP eCLIP11.89□□□□□ -0.51
CLK3-205ENST00000561673 SLC12A7Q9Y666 1083 aa11.89□□□□□ -0.51
CLK3-205ENST00000561673 VCANP13611 3396 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 TMEM265A0A087WTH1 108 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 SORBS3O60504 671 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 CALM1P0DP23 149 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 CALM2P0DP24 149 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 CALM3P0DP25 149 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 TGFB3P10600 412 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 PBX2P40425 430 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 MRPS9P82933 396 aaKnown RBP11.88□□□□□ -0.51
CLK3-205ENST00000561673 RNF20Q5VTR2 975 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 GDF6Q6KF10 455 aaPredicted RBP11.88□□□□□ -0.51
CLK3-205ENST00000561673 USP17L6PQ6QN14 398 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 RASEFQ8IZ41 740 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 CCDC82Q8N4S0 544 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 FANCBQ8NB91 859 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 TIFAQ96CG3 184 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 NEK1Q96PY6 1258 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 CTAGE1Q96RT6 745 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 PBX4Q9BYU1 374 aa11.88□□□□□ -0.51
CLK3-205ENST00000561673 SEC63Q9UGP8 760 aaKnown RBP11.88□□□□□ -0.51
CLK3-205ENST00000561673 CHD7Q9P2D1 2997 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms