RNA–Protein interactions for RNA: ENST00000560825.5

GABPB1-210, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-210ENST00000560825 KAT2BQ92831 832 aa13□□□□□ -0.33
GABPB1-210ENST00000560825 TCEANC2Q96MN5 208 aa13□□□□□ -0.33
GABPB1-210ENST00000560825 AMNQ9BXJ7 453 aa13□□□□□ -0.33
GABPB1-210ENST00000560825 SEMA6BQ9H3T3 888 aa13□□□□□ -0.33
GABPB1-210ENST00000560825 HIPK3Q9H422 1215 aa13□□□□□ -0.33
GABPB1-210ENST00000560825 DDX41Q9UJV9 622 aaKnown RBP13□□□□□ -0.33
GABPB1-210ENST00000560825 SIP14410 1827 aa13□□□□□ -0.33
GABPB1-210ENST00000560825 LOC102724159A0A0B4J2E5 919 aa12.99□□□□□ -0.33
GABPB1-210ENST00000560825 SH2B2O14492 632 aaPredicted RBP12.99□□□□□ -0.33
GABPB1-210ENST00000560825 PRC1O43663 620 aa12.99□□□□□ -0.33
GABPB1-210ENST00000560825 NR3C2P08235 984 aa12.99□□□□□ -0.33
GABPB1-210ENST00000560825 CHMP4BP1P59074 171 aa12.99□□□□□ -0.33
GABPB1-210ENST00000560825 TRDNQ13061 729 aa12.99□□□□□ -0.33
GABPB1-210ENST00000560825 PWP2Q15269 919 aaKnown RBP12.99□□□□□ -0.33
GABPB1-210ENST00000560825 ADCK5Q3MIX3 580 aa12.99□□□□□ -0.33
GABPB1-210ENST00000560825 RALYLQ86SE5 291 aaKnown RBP12.99□□□□□ -0.33
GABPB1-210ENST00000560825 ZNF654Q8IZM8 581 aa12.99□□□□□ -0.33
GABPB1-210ENST00000560825 SRBD1Q8N5C6 995 aaKnown RBP12.99□□□□□ -0.33
GABPB1-210ENST00000560825 NSUN6Q8TEA1 469 aaKnown RBP12.99□□□□□ -0.33
GABPB1-210ENST00000560825 MYLIPQ8WY64 445 aa12.99□□□□□ -0.33
GABPB1-210ENST00000560825 CDX2Q99626 313 aaPredicted RBP12.99□□□□□ -0.33
GABPB1-210ENST00000560825 PDCD2LQ9BRP1 358 aa12.99□□□□□ -0.33
GABPB1-210ENST00000560825 MRPL11Q9Y3B7 192 aaKnown RBP12.99□□□□□ -0.33
GABPB1-210ENST00000560825 MMP3P08254 477 aa12.98□□□□□ -0.33
GABPB1-210ENST00000560825 MYCLP12524 364 aaPredicted RBP12.98□□□□□ -0.33
GABPB1-210ENST00000560825 NT5C2P49902 561 aa12.98□□□□□ -0.33
GABPB1-210ENST00000560825 PGM5Q15124 567 aa12.98□□□□□ -0.33
GABPB1-210ENST00000560825 TCTN1Q2MV58 587 aa12.98□□□□□ -0.33
GABPB1-210ENST00000560825 ARHGEF16Q5VV41 709 aa12.98□□□□□ -0.33
GABPB1-210ENST00000560825 WNT8BQ93098 351 aa12.98□□□□□ -0.33
GABPB1-210ENST00000560825 ANO2Q9NQ90 1003 aa12.98□□□□□ -0.33
GABPB1-210ENST00000560825 STXBP5LQ9Y2K9 1186 aa12.98□□□□□ -0.33
GABPB1-210ENST00000560825 CABYRO75952 493 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 ZNF286BP0CG31 522 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 CPA1P15085 419 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 MYOGP15173 224 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 CPT1AP50416 773 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 MRPS9P82933 396 aaKnown RBP12.97□□□□□ -0.33
GABPB1-210ENST00000560825 SMAD3P84022 425 aaKnown RBP12.97□□□□□ -0.33
GABPB1-210ENST00000560825 SEMA3FQ13275 785 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 GPNMBQ14956 572 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 GRIN2CQ14957 1233 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 STXBP2Q15833 593 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 BMP2KLQ5H9B9 411 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 FAM47CQ5HY64 1035 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 USP17L6PQ6QN14 398 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 OTOP2Q7RTS6 562 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 FCHSD1Q86WN1 690 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 MTG1Q9BT17 334 aaPredicted RBP12.97□□□□□ -0.33
GABPB1-210ENST00000560825 PBX4Q9BYU1 374 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 IL23AQ9NPF7 189 aa12.97□□□□□ -0.33
GABPB1-210ENST00000560825 PNMA6FA0A0J9YX94 578 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 TLR3O15455 904 aaKnown RBP12.96□□□□□ -0.33
GABPB1-210ENST00000560825 DNAJB2P25686 324 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 ZNF200P98182 395 aaPredicted RBP12.96□□□□□ -0.33
GABPB1-210ENST00000560825 PPIGQ13427 754 aaKnown RBP eCLIP12.96□□□□□ -0.33
GABPB1-210ENST00000560825 TTLL4Q14679 1199 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 HSDL1Q3SXM5 330 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 ZNF697Q5TEC3 545 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 GDF6Q6KF10 455 aaPredicted RBP12.96□□□□□ -0.33
GABPB1-210ENST00000560825 CENPQQ7L2Z9 268 aaPredicted RBP12.96□□□□□ -0.33
GABPB1-210ENST00000560825 VSIG10LQ86VR7 867 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 MCF2L2Q86YR7 1114 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 CCDC82Q8N4S0 544 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 DHX38Q92620 1227 aaKnown RBP12.96□□□□□ -0.33
GABPB1-210ENST00000560825 POLR3EQ9NVU0 708 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 PNMA2Q9UL42 364 aa12.96□□□□□ -0.33
GABPB1-210ENST00000560825 YBX2Q9Y2T7 364 aaKnown RBP12.96□□□□□ -0.33
GABPB1-210ENST00000560825 ADAMTS3O15072 1205 aa12.96□□□□□ -0.34
GABPB1-210ENST00000560825 ZEB2O60315 1214 aa12.96□□□□□ -0.34
GABPB1-210ENST00000560825 RABGGTBP53611 331 aa12.96□□□□□ -0.34
GABPB1-210ENST00000560825 DEFB128Q7Z7B8 93 aa12.96□□□□□ -0.34
GABPB1-210ENST00000560825 CATIPQ7Z7H3 387 aa12.96□□□□□ -0.34
GABPB1-210ENST00000560825 TMEM199Q8N511 208 aa12.96□□□□□ -0.34
GABPB1-210ENST00000560825 SLC17A8Q8NDX2 589 aa12.96□□□□□ -0.34
GABPB1-210ENST00000560825 SPDYE1Q8NFV5 336 aaPredicted RBP12.96□□□□□ -0.34
GABPB1-210ENST00000560825 IWS1Q96ST2 819 aa12.96□□□□□ -0.34
GABPB1-210ENST00000560825 BRPF3Q9ULD4 1205 aa12.96□□□□□ -0.34
GABPB1-210ENST00000560825 COL4A4P53420 1690 aaPredicted RBP12.95□□□□□ -0.34
GABPB1-210ENST00000560825 FRMPD4Q14CM0 1322 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 ERICH2A1L162 156 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 MEIS2O14770 477 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 NKRFO15226 690 aaKnown RBP eCLIP12.95□□□□□ -0.34
GABPB1-210ENST00000560825 EIF3JO75822 258 aaKnown RBP12.95□□□□□ -0.34
GABPB1-210ENST00000560825 ARHGEF15O94989 841 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 GH1P01241 217 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 UBA1P22314 1058 aaKnown RBP12.95□□□□□ -0.34
GABPB1-210ENST00000560825 MYSM1Q5VVJ2 828 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 TYW1BQ6NUM6 668 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 SPRED2Q7Z698 418 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 TMCO2Q7Z6W1 182 aaPredicted RBP12.95□□□□□ -0.34
GABPB1-210ENST00000560825 USP38Q8NB14 1042 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 OSBPL7Q9BZF2 842 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 RTEL1Q9NZ71 1219 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 MRVI1Q9Y6F6 885 aa12.95□□□□□ -0.34
GABPB1-210ENST00000560825 MCM5P33992 734 aa12.94□□□□□ -0.34
GABPB1-210ENST00000560825 EXOSC10Q01780 885 aaKnown RBP12.94□□□□□ -0.34
GABPB1-210ENST00000560825 UBE2SQ16763 222 aa12.94□□□□□ -0.34
GABPB1-210ENST00000560825 HERVK_113Q902F9 699 aa12.94□□□□□ -0.34
GABPB1-210ENST00000560825 ALG1Q9BT22 464 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms