RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 SEC23AQ15436 765 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 LY6KQ17RY6 165 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 BRDTQ58F21 947 aaPredicted RBP13.58□□□□□ -0.24
USP3-214ENST00000559718 CYB5R4Q7L1T6 521 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 DEFB128Q7Z7B8 93 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 AFG1LQ8WV93 481 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 UBAC1Q9BSL1 405 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 MTIF3Q9H2K0 278 aaKnown RBP13.58□□□□□ -0.24
USP3-214ENST00000559718 MSRAQ9UJ68 235 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 SUPT16HQ9Y5B9 1047 aaKnown RBP13.58□□□□□ -0.24
USP3-214ENST00000559718 MYH6P13533 1939 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 RAD50Q92878 1312 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 ZBBXA8MT70 800 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 B4DLN1 442 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 OPLAHO14841 1288 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 PPP1R11O60927 126 aaPredicted RBP13.57□□□□□ -0.24
USP3-214ENST00000559718 EIF2AK2P19525 551 aaKnown RBP13.57□□□□□ -0.24
USP3-214ENST00000559718 MRPL12P52815 198 aaKnown RBP13.57□□□□□ -0.24
USP3-214ENST00000559718 RAB30Q15771 203 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 IFIT1BQ5T764 474 aaKnown RBP13.57□□□□□ -0.24
USP3-214ENST00000559718 TTC22Q5TAA0 569 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 NFRKBQ6P4R8 1299 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 FBXO11Q86XK2 927 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 RPUSD2Q8IZ73 545 aaKnown RBP13.57□□□□□ -0.24
USP3-214ENST00000559718 NSUN6Q8TEA1 469 aaKnown RBP13.57□□□□□ -0.24
USP3-214ENST00000559718 PPM1EQ8WY54 764 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 RMDN3Q96TC7 470 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 CNNM2Q9H8M5 875 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 MRPL11Q9Y3B7 192 aaKnown RBP13.57□□□□□ -0.24
USP3-214ENST00000559718 SLC4A7Q9Y6M7 1214 aa13.57□□□□□ -0.24
USP3-214ENST00000559718 KPNA6O60684 536 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 CFBP00751 764 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 MMP3P08254 477 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 PTH1RQ03431 593 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 ARHGAP1Q07960 439 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 SLC35G1Q2M3R5 365 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 ARHGEF16Q5VV41 709 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 CHST3Q7LGC8 479 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 MCF2L2Q86YR7 1114 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 GAS2L1Q99501 681 aaPredicted RBP13.56□□□□□ -0.24
USP3-214ENST00000559718 SENP2Q9HC62 589 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 MAD2L2Q9UI95 211 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 TAF6LQ9Y6J9 622 aa13.56□□□□□ -0.24
USP3-214ENST00000559718 KIAA1217Q5T5P2 1943 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 KLRF2D3W0D1 207 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 GH1P01241 217 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 IQCF3P0C7M6 154 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 CHRM1P11229 460 aaPredicted RBP13.55□□□□□ -0.24
USP3-214ENST00000559718 ATP2A2P16615 1042 aaKnown RBP13.55□□□□□ -0.24
USP3-214ENST00000559718 IRX6P78412 446 aaPredicted RBP13.55□□□□□ -0.24
USP3-214ENST00000559718 STXBP2Q15833 593 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 KAT2BQ92831 832 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 MTMR8Q96EF0 704 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 CTAGE1Q96RT6 745 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 IWS1Q96ST2 819 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 AMNQ9BXJ7 453 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 SLC28A3Q9HAS3 691 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 PXMP2Q9NR77 195 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 CIZ1Q9ULV3 898 aaPredicted RBP13.55□□□□□ -0.24
USP3-214ENST00000559718 TET1Q8NFU7 2136 aa13.55□□□□□ -0.24
USP3-214ENST00000559718 BAZ2BQ9UIF8 2168 aaKnown RBP13.55□□□□□ -0.24
USP3-214ENST00000559718 PALM3A6NDB9 673 aaPredicted RBP13.54□□□□□ -0.24
USP3-214ENST00000559718 NR3C2P08235 984 aa13.54□□□□□ -0.24
USP3-214ENST00000559718 PFKMP08237 780 aa13.54□□□□□ -0.24
USP3-214ENST00000559718 CYP21A2P08686 494 aa13.54□□□□□ -0.24
USP3-214ENST00000559718 IGFBP4P22692 258 aa13.54□□□□□ -0.24
USP3-214ENST00000559718 CHMLP26374 656 aa13.54□□□□□ -0.24
USP3-214ENST00000559718 HOXA13P31271 388 aaPredicted RBP13.54□□□□□ -0.24
USP3-214ENST00000559718 HSD17B4P51659 736 aa13.54□□□□□ -0.24
USP3-214ENST00000559718 PTPN11Q06124 597 aaPredicted RBP13.54□□□□□ -0.24
USP3-214ENST00000559718 CCDC85BQ15834 202 aaPredicted RBP13.54□□□□□ -0.24
USP3-214ENST00000559718 PTGISQ16647 500 aa13.54□□□□□ -0.24
USP3-214ENST00000559718 GDF6Q6KF10 455 aaPredicted RBP13.54□□□□□ -0.24
USP3-214ENST00000559718 MAF1Q9H063 256 aa13.54□□□□□ -0.24
USP3-214ENST00000559718 DDX41Q9UJV9 622 aaKnown RBP13.54□□□□□ -0.24
USP3-214ENST00000559718 TRIP12Q14669 1992 aaPredicted RBP13.54□□□□□ -0.24
USP3-214ENST00000559718 CHD9Q3L8U1 2897 aa13.54□□□□□ -0.24
USP3-214ENST00000559718 ZBTB5O15062 677 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 SORBS3O60504 671 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 EIF3JO75822 258 aaKnown RBP13.53□□□□□ -0.24
USP3-214ENST00000559718 RGS20O76081 388 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 GPNMBQ14956 572 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 PPP2R2DQ66LE6 453 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 STOX1Q6ZVD7 989 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 HOMER1Q86YM7 354 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 RETREG2Q8NC44 543 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 IL31RAQ8NI17 732 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 DHX38Q92620 1227 aaKnown RBP13.53□□□□□ -0.24
USP3-214ENST00000559718 ZFP91Q96JP5 570 aaPredicted RBP13.53□□□□□ -0.24
USP3-214ENST00000559718 NOD1Q9Y239 953 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 PCDHA11Q9Y5I1 949 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 PCDHA1Q9Y5I3 950 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 MRVI1Q9Y6F6 885 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 CHD7Q9P2D1 2997 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 TANC1Q9C0D5 1861 aa13.53□□□□□ -0.24
USP3-214ENST00000559718 IFIT3O14879 490 aaKnown RBP13.52□□□□□ -0.25
USP3-214ENST00000559718 CYTH3O43739 400 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 ZNF286BP0CG31 522 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 MYCLP12524 364 aaPredicted RBP13.52□□□□□ -0.25
USP3-214ENST00000559718 GHRHRQ02643 423 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms