RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 MCF2L2Q86YR7 1114 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 FANCBQ8NB91 859 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 GPKOWQ92917 476 aaPredicted RBP eCLIP11.15□□□□□ -0.62
SPG11-214ENST00000558989 MTMR8Q96EF0 704 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 RMDN3Q96TC7 470 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 MTA3Q9BTC8 594 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 USP26Q9BXU7 913 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 GDPD2Q9HCC8 539 aa11.15□□□□□ -0.62
SPG11-214ENST00000558989 GOLGA8AA7E2F4 631 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 POM121CA8CG34 1229 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 GOLGA8BA8MQT2 603 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 ADAMTS4O75173 837 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 DUSP11O75319 330 aaKnown RBP11.14□□□□□ -0.63
SPG11-214ENST00000558989 CALM1P0DP23 149 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 CALM2P0DP24 149 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 CALM3P0DP25 149 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 RTN1Q16799 776 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 GNASQ5JWF2 1037 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 TAPT1Q6NXT6 567 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 TLK2Q86UE8 772 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 COPS5Q92905 334 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 UPF3BQ9BZI7 483 aaKnown RBP11.14□□□□□ -0.63
SPG11-214ENST00000558989 SPC25Q9HBM1 224 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 DNAH12Q6ZR08 3092 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 RTP1P59025 263 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 CHMP4BP1P59074 171 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 TRIM60Q495X7 471 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 TMTC3Q6ZXV5 915 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 SGMS1Q86VZ5 419 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 MPHOSPH6Q99547 160 aaKnown RBP11.14□□□□□ -0.63
SPG11-214ENST00000558989 REPIN1Q9BWE0 567 aaKnown RBP11.14□□□□□ -0.63
SPG11-214ENST00000558989 SPZ1Q9BXG8 430 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 WDR11Q9BZH6 1224 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 AP5M1Q9H0R1 490 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 VTA1Q9NP79 307 aa11.14□□□□□ -0.63
SPG11-214ENST00000558989 PRDM5Q9NQX1 630 aaPredicted RBP11.14□□□□□ -0.63
SPG11-214ENST00000558989 A0A1W2PQ45 241 aaPredicted RBP11.13□□□□□ -0.63
SPG11-214ENST00000558989 A0A1W2PQY0 241 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 ASGR1P07306 291 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 CAPN2P17655 700 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 RPS6KB1P23443 525 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 PSMA5P28066 241 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 CDC27P30260 824 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 GNAQP50148 359 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 CCT2P78371 535 aaKnown RBP11.13□□□□□ -0.63
SPG11-214ENST00000558989 HIC1Q14526 733 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 USP17L6PQ6QN14 398 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 SLC39A5Q6ZMH5 540 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 HEATR3Q7Z4Q2 680 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 DNERQ8NFT8 737 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 NSUN6Q8TEA1 469 aaKnown RBP11.13□□□□□ -0.63
SPG11-214ENST00000558989 PPP1R13LQ8WUF5 828 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 KCNB2Q92953 911 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 STARD7Q9NQZ5 370 aa11.13□□□□□ -0.63
SPG11-214ENST00000558989 COLQQ9Y215 455 aaPredicted RBP11.13□□□□□ -0.63
SPG11-214ENST00000558989 GCOM1H8Y6P7 765 aaPredicted RBP11.12□□□□□ -0.63
SPG11-214ENST00000558989 PQBP1O60828 265 aaKnown RBP11.12□□□□□ -0.63
SPG11-214ENST00000558989 POLR2MP0CAP2 368 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 ADD1P35611 737 aaKnown RBP11.12□□□□□ -0.63
SPG11-214ENST00000558989 METAP2P50579 478 aaKnown RBP eCLIP11.12□□□□□ -0.63
SPG11-214ENST00000558989 ACLYP53396 1101 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 IL31RAQ8NI17 732 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 SMARCC2Q8TAQ2 1214 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 MAP3K14Q99558 947 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 LZTS2Q9BRK4 669 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 PXMP2Q9NR77 195 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 PHF24Q9UPV7 400 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 CNTNAP5Q8WYK1 1306 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 B4DLN1 442 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 DTNBO60941 627 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 ARIH2O95376 493 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 SEC24BO95487 1268 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 NR3C2P08235 984 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 TXNP10599 105 aaKnown RBP11.12□□□□□ -0.63
SPG11-214ENST00000558989 RFX1P22670 979 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 HSD17B4P51659 736 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 MRPL12P52815 198 aaKnown RBP11.12□□□□□ -0.63
SPG11-214ENST00000558989 GJA9P57773 515 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 MDM2Q00987 491 aaPredicted RBP11.12□□□□□ -0.63
SPG11-214ENST00000558989 STK3Q13188 491 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 PPP2R5BQ15173 497 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 UBE2SQ16763 222 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 LY6KQ17RY6 165 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 IQSEC1Q6DN90 963 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 CXCL17Q6UXB2 119 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 OR6J1Q8NGC5 347 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 MORC4Q8TE76 937 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 RBM28Q9NW13 759 aaKnown RBP11.12□□□□□ -0.63
SPG11-214ENST00000558989 CYP46A1Q9Y6A2 500 aa11.12□□□□□ -0.63
SPG11-214ENST00000558989 V9GY48 417 aaPredicted RBP11.12□□□□□ -0.63
SPG11-214ENST00000558989 MYL3P08590 195 aa11.11□□□□□ -0.63
SPG11-214ENST00000558989 VAMP1P23763 118 aa11.11□□□□□ -0.63
SPG11-214ENST00000558989 PSMC6P62333 389 aa11.11□□□□□ -0.63
SPG11-214ENST00000558989 STXBP2Q15833 593 aa11.11□□□□□ -0.63
SPG11-214ENST00000558989 FSCN1Q16658 493 aaKnown RBP11.11□□□□□ -0.63
SPG11-214ENST00000558989 RUFY3Q7L099 469 aa11.11□□□□□ -0.63
SPG11-214ENST00000558989 KLHDC9Q8NEP7 349 aa11.11□□□□□ -0.63
SPG11-214ENST00000558989 CUL5Q93034 780 aa11.11□□□□□ -0.63
SPG11-214ENST00000558989 NCOA5Q9HCD5 579 aaKnown RBP11.11□□□□□ -0.63
SPG11-214ENST00000558989 RTEL1Q9NZ71 1219 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms