RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 TTF2Q9UNY4 1162 aaKnown RBP9.16□□□□□ -0.94
SPG11-213ENST00000558988 MROH5Q6ZUA9 1318 aa9.15□□□□□ -0.94
SPG11-213ENST00000558988 TBC1D8O95759 1140 aa9.15□□□□□ -0.94
SPG11-213ENST00000558988 ADH5P11766 374 aa9.15□□□□□ -0.94
SPG11-213ENST00000558988 PTPN12Q05209 780 aaKnown RBP9.15□□□□□ -0.94
SPG11-213ENST00000558988 UBE4AQ14139 1066 aa9.15□□□□□ -0.94
SPG11-213ENST00000558988 IKBKEQ14164 716 aa9.15□□□□□ -0.94
SPG11-213ENST00000558988 C15orf52Q6ZUT6 534 aaKnown RBP9.15□□□□□ -0.94
SPG11-213ENST00000558988 ANKMY2Q8IV38 441 aa9.15□□□□□ -0.94
SPG11-213ENST00000558988 NETO1Q8TDF5 533 aa9.15□□□□□ -0.94
SPG11-213ENST00000558988 PRMT6Q96LA8 375 aaPredicted RBP9.15□□□□□ -0.94
SPG11-213ENST00000558988 SIL1Q9H173 461 aa9.15□□□□□ -0.94
SPG11-213ENST00000558988 NOB1Q9ULX3 412 aaKnown RBP9.15□□□□□ -0.94
SPG11-213ENST00000558988 FNDC3AQ9Y2H6 1198 aaKnown RBP9.15□□□□□ -0.94
SPG11-213ENST00000558988 TCP10L2B9ZVM9 353 aa9.14□□□□□ -0.95
SPG11-213ENST00000558988 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.14□□□□□ -0.95
SPG11-213ENST00000558988 KRT1P04264 644 aa9.14□□□□□ -0.95
SPG11-213ENST00000558988 UBTFL1P0CB47 393 aaPredicted RBP9.14□□□□□ -0.95
SPG11-213ENST00000558988 CAVIN4Q5BKX8 364 aa9.14□□□□□ -0.95
SPG11-213ENST00000558988 POM121Q96HA1 1249 aa9.14□□□□□ -0.95
SPG11-213ENST00000558988 CLMNQ96JQ2 1002 aa9.14□□□□□ -0.95
SPG11-213ENST00000558988 FAM84BQ96KN1 310 aaPredicted RBP9.14□□□□□ -0.95
SPG11-213ENST00000558988 USP44Q9H0E7 712 aa9.14□□□□□ -0.95
SPG11-213ENST00000558988 TDRD3Q9H7E2 651 aaKnown RBP9.14□□□□□ -0.95
SPG11-213ENST00000558988 DZANK1Q9NVP4 752 aa9.14□□□□□ -0.95
SPG11-213ENST00000558988 VAV3Q9UKW4 847 aa9.14□□□□□ -0.95
SPG11-213ENST00000558988 RIPOR2Q9Y4F9 1068 aa9.14□□□□□ -0.95
SPG11-213ENST00000558988 UTYO14607 1347 aa9.13□□□□□ -0.95
SPG11-213ENST00000558988 DYNC1LI2O43237 492 aaPredicted RBP9.13□□□□□ -0.95
SPG11-213ENST00000558988 BRD2P25440 801 aaKnown RBP9.13□□□□□ -0.95
SPG11-213ENST00000558988 CACNB3P54284 484 aa9.13□□□□□ -0.95
SPG11-213ENST00000558988 RASA3Q14644 834 aa9.13□□□□□ -0.95
SPG11-213ENST00000558988 RABL6Q3YEC7 729 aaPredicted RBP9.13□□□□□ -0.95
SPG11-213ENST00000558988 NBPF12Q5TAG4 269 aaPredicted RBP9.13□□□□□ -0.95
SPG11-213ENST00000558988 SEZ6L2Q6UXD5 910 aa9.13□□□□□ -0.95
SPG11-213ENST00000558988 TDRD7Q8NHU6 1098 aaKnown RBP9.13□□□□□ -0.95
SPG11-213ENST00000558988 ZBED3Q96IU2 234 aaPredicted RBP9.13□□□□□ -0.95
SPG11-213ENST00000558988 C20orf173Q96LM9 149 aa9.13□□□□□ -0.95
SPG11-213ENST00000558988 SAGE1Q9NXZ1 904 aa9.13□□□□□ -0.95
SPG11-213ENST00000558988 ZNF70Q9UC06 446 aaPredicted RBP9.13□□□□□ -0.95
SPG11-213ENST00000558988 SALL4Q9UJQ4 1053 aa9.13□□□□□ -0.95
SPG11-213ENST00000558988 FAM205AQ6ZU69 1335 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 PDE8BO95263 885 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 IFIT1P09914 478 aaKnown RBP9.12□□□□□ -0.95
SPG11-213ENST00000558988 SLC5A1P13866 664 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 CRKP46108 304 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 PUM3Q15397 648 aaKnown RBP9.12□□□□□ -0.95
SPG11-213ENST00000558988 ALDH1L2Q3SY69 923 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 VN1R5Q7Z5H4 357 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 FAM181AQ8N9Y4 354 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 FRAT1Q92837 279 aaPredicted RBP9.12□□□□□ -0.95
SPG11-213ENST00000558988 SAP130Q9H0E3 1048 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 FAM13BQ9NYF5 915 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 TFIP11Q9UBB9 837 aaKnown RBP9.12□□□□□ -0.95
SPG11-213ENST00000558988 ECM29Q5VYK3 1845 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 SSC5DA1L4H1 1573 aa9.12□□□□□ -0.95
SPG11-213ENST00000558988 PCNTO95613 3336 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 COL1A1P02452 1464 aaPredicted RBP9.11□□□□□ -0.95
SPG11-213ENST00000558988 EYA2O00167 538 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 MMP14P50281 582 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 SOX10P56693 466 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 FKBP1AP62942 108 aaKnown RBP9.11□□□□□ -0.95
SPG11-213ENST00000558988 PRKCQQ04759 706 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 SREBF2Q12772 1141 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 TNFAIP1Q13829 316 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 SUPT20HL1Q3ZLR7 823 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 FBXO33Q7Z6M2 555 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 VGLL2Q8N8G2 317 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 API5Q9BZZ5 524 aaKnown RBP9.11□□□□□ -0.95
SPG11-213ENST00000558988 TMEM39BQ9GZU3 492 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 ACSS3Q9H6R3 686 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 ELP3Q9H9T3 547 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 FAM105AQ9NUU6 356 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 SERPINA10Q9UK55 444 aa9.11□□□□□ -0.95
SPG11-213ENST00000558988 PA2G4Q9UQ80 394 aaKnown RBP9.11□□□□□ -0.95
SPG11-213ENST00000558988 LRRFIP2Q9Y608 721 aaKnown RBP9.11□□□□□ -0.95
SPG11-213ENST00000558988 USP17L15C9J2P7 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L10C9JJH3 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L13C9JLJ4 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L12C9JPN9 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L11C9JVI0 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L21D6R901 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L18D6R9N7 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L22D6RA61 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L17D6RBQ6 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L19D6RCP7 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L20D6RJB6 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 CCER2I3L3R5 266 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 USP17L24Q0WX57 530 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 ATP2B3Q16720 1220 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 LDLRAD1Q5T700 205 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 CTU1Q7Z7A3 348 aaKnown RBP9.1□□□□□ -0.95
SPG11-213ENST00000558988 ZNF296Q8WUU4 475 aaPredicted RBP9.1□□□□□ -0.95
SPG11-213ENST00000558988 TEKT1Q969V4 418 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 CLUAP1Q96AJ1 413 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 MEIS3Q99687 375 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 TMOD2Q9NZR1 351 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 TMEM63CQ9P1W3 806 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 CNTN3Q9P232 1028 aa9.1□□□□□ -0.95
SPG11-213ENST00000558988 PPP2R3BQ9Y5P8 575 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms