RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 PCDHA2Q9Y5H9 948 aa5.71□□□□□ -1.5
VPS13C-207ENST00000558919 HCFC2Q9Y5Z7 792 aa5.71□□□□□ -1.5
VPS13C-207ENST00000558919 RFXAPO00287 272 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 ADCY3O60266 1144 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 BUB1BO60566 1050 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-207ENST00000558919 NCAM1P13591 858 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 IGFBP6P24592 240 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-207ENST00000558919 FPR2P25090 351 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 SLC6A11P48066 632 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 USP53Q70EK8 1073 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 DPH6Q7L8W6 267 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 SCUBE1Q8IWY4 988 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 LRRC56Q8IYG6 542 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-207ENST00000558919 ZBTB38Q8NAP3 1195 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-207ENST00000558919 PMFBP1Q8TBY8 1022 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 SEC14L1Q92503 715 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 SRPK1Q96SB4 655 aaKnown RBP5.7□□□□□ -1.5
VPS13C-207ENST00000558919 ZFYVE21Q9BQ24 234 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 KRTAP4-5Q9BYR2 181 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 AP5M1Q9H0R1 490 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 RXFP1Q9HBX9 757 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 PFDN2Q9UHV9 154 aa5.7□□□□□ -1.5
VPS13C-207ENST00000558919 COA3Q9Y2R0 106 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-207ENST00000558919 FAM221BA6H8Z2 402 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 NUAK1O60285 661 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 SSPNQ14714 243 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 ZC3H12BQ5HYM0 836 aaKnown RBP5.69□□□□□ -1.5
VPS13C-207ENST00000558919 YOD1Q5VVQ6 348 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-207ENST00000558919 SIAH1Q8IUQ4 282 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 TMEFF1Q8IYR6 380 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 UBXN4Q92575 508 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 ALG3Q92685 438 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 CHAMP1Q96JM3 812 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 DNAJC2Q99543 621 aaKnown RBP5.69□□□□□ -1.5
VPS13C-207ENST00000558919 PHF20Q9BVI0 1012 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 OSBPL2Q9H1P3 480 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 FBXL7Q9UJT9 491 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 KDM2BQ8NHM5 1336 aa5.69□□□□□ -1.5
VPS13C-207ENST00000558919 DIAPH1O60610 1272 aaKnown RBP5.68□□□□□ -1.5
VPS13C-207ENST00000558919 ASGR2P07307 311 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 PI3P19957 117 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 NCKAP1LP55160 1127 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 CHRNA2Q15822 529 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 NTRK3Q16288 839 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 STYK1Q6J9G0 422 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 AMIGO3Q86WK7 504 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 TMEM151BQ8IW70 566 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 CPA5Q8WXQ8 436 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 IPO9Q96P70 1041 aaKnown RBP5.68□□□□□ -1.5
VPS13C-207ENST00000558919 CDC6Q99741 560 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 EPB41L4AQ9HCS5 686 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-207ENST00000558919 CLDND1Q9NY35 253 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 SIT1Q9Y3P8 196 aa5.68□□□□□ -1.5
VPS13C-207ENST00000558919 TRBV23-1A0A0A0MS06 115 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 SGSM2O43147 1006 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 MSCO60682 206 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 FAM153BP0C7A2 387 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 PMLP29590 882 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 SUMO1P63165 101 aaKnown RBP5.67□□□□□ -1.5
VPS13C-207ENST00000558919 CAP1Q01518 475 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 NFE2L2Q16236 605 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 CNKSR3Q6P9H4 555 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 FAM129CQ86XR2 697 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 IFNL3Q8IZI9 196 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 JMYQ8N9B5 988 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 DACT3Q96B18 629 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-207ENST00000558919 DNAJC7Q99615 494 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 IRF2BPLQ9H1B7 796 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 CDIP1Q9H305 208 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 EPB41L1Q9H4G0 881 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 PLA2G2DQ9UNK4 145 aa5.67□□□□□ -1.5
VPS13C-207ENST00000558919 ATF2P15336 505 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 GPR85P60893 370 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 FOXO4P98177 505 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 KIZQ2M2Z5 673 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 EMC4Q5J8M3 183 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 FAM209AQ5JX71 171 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 FOXB2Q5VYV0 432 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 KRTAP5-3Q6L8H2 238 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 KCNT2Q6UVM3 1135 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 LBX2Q6XYB7 198 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 MAMDC2Q7Z304 686 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-207ENST00000558919 NLGN1Q8N2Q7 840 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS13C-207ENST00000558919 PANK1Q8TE04 598 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 DHRS4Q9BTZ2 278 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 ZNF652Q9Y2D9 606 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 FAN1Q9Y2M0 1017 aa5.66□□□□□ -1.5
VPS13C-207ENST00000558919 BLACEA4D250 179 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 HGSO14964 777 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-207ENST00000558919 DGKIO75912 1065 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 ZSCAN22P10073 491 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-207ENST00000558919 CACNB2Q08289 660 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-207ENST00000558919 TCERG1LQ5VWI1 586 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 MILR1Q7Z6M3 343 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 B3GNT8Q7Z7M8 397 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 MIB1Q86YT6 1006 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.65□□□□□ -1.5
VPS13C-207ENST00000558919 PTPRN2Q92932 1015 aa5.65□□□□□ -1.5
VPS13C-207ENST00000558919 KISS1RQ969F8 398 aaPredicted RBP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms