RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 EXOSC10Q01780 885 aaKnown RBP9.96□□□□□ -0.82
USP3-208ENST00000558285 LAMC2Q13753 1193 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 SNX17Q15036 470 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 TMTC3Q6ZXV5 915 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 HEATR3Q7Z4Q2 680 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 SPNS2Q8IVW8 549 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 FBXL16Q8N461 479 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 FERMT2Q96AC1 680 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 FGD4Q96M96 766 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 KATNAL1Q9BW62 490 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 UPF2Q9HAU5 1272 aaKnown RBP9.96□□□□□ -0.82
USP3-208ENST00000558285 PRDM5Q9NQX1 630 aaPredicted RBP9.96□□□□□ -0.82
USP3-208ENST00000558285 PXMP2Q9NR77 195 aa9.96□□□□□ -0.82
USP3-208ENST00000558285 PIK3CDO00329 1044 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 STK25O00506 426 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 CLTBP09497 229 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 MYCLP12524 364 aaPredicted RBP9.95□□□□□ -0.82
USP3-208ENST00000558285 SMPD1P17405 629 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 EIF2AK2P19525 551 aaKnown RBP9.95□□□□□ -0.82
USP3-208ENST00000558285 BMP8BP34820 402 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 MNX1P50219 401 aaPredicted RBP9.95□□□□□ -0.82
USP3-208ENST00000558285 LRRC26Q2I0M4 334 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 ASTLQ6HA08 431 aaPredicted RBP9.95□□□□□ -0.82
USP3-208ENST00000558285 SEPT14Q6ZU15 432 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 Q6ZUG5 572 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 RUFY3Q7L099 469 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 FCHSD1Q86WN1 690 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 CCDC148Q8NFR7 591 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 BICD2Q8TD16 824 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 MTG1Q9BT17 334 aaPredicted RBP9.95□□□□□ -0.82
USP3-208ENST00000558285 MYL10Q9BUA6 226 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 UBE2OQ9C0C9 1292 aaKnown RBP9.95□□□□□ -0.82
USP3-208ENST00000558285 GNEQ9Y223 722 aaKnown RBP9.95□□□□□ -0.82
USP3-208ENST00000558285 SNX14Q9Y5W7 946 aa9.95□□□□□ -0.82
USP3-208ENST00000558285 PQBP1O60828 265 aaKnown RBP9.94□□□□□ -0.82
USP3-208ENST00000558285 RAG1P15918 1043 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 XBP1P17861 261 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 GNA11P29992 359 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 NAPAP54920 295 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 PTPN11Q06124 597 aaPredicted RBP9.94□□□□□ -0.82
USP3-208ENST00000558285 NEDD9Q14511 834 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 TAPT1Q6NXT6 567 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 ANKRD33Q7Z3H0 272 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 FAM177A1Q8N128 213 aaPredicted RBP9.94□□□□□ -0.82
USP3-208ENST00000558285 CCDC155Q8N6L0 562 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 PIBF1Q8WXW3 757 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 TNPO1Q92973 898 aaKnown RBP9.94□□□□□ -0.82
USP3-208ENST00000558285 BRF1Q92994 677 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 TAAR1Q96RJ0 339 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 PDCD2LQ9BRP1 358 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 LRRC2Q9BYS8 371 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 KATNBL1Q9H079 304 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 ZMYND15Q9H091 742 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 MTIF3Q9H2K0 278 aaKnown RBP9.94□□□□□ -0.82
USP3-208ENST00000558285 TMEM39AQ9NV64 488 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 TCEAL9Q9UHQ7 104 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 ZMYND8Q9ULU4 1186 aaPredicted RBP9.94□□□□□ -0.82
USP3-208ENST00000558285 NOD1Q9Y239 953 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 TAF6LQ9Y6J9 622 aa9.94□□□□□ -0.82
USP3-208ENST00000558285 ARVCFO00192 962 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 NOP56O00567 594 aaKnown RBP9.93□□□□□ -0.82
USP3-208ENST00000558285 MAFGO15525 162 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 MYL3P08590 195 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 ADCY7P51828 1080 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 DGKDQ16760 1214 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 TRIM60Q495X7 471 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 SKAP1Q86WV1 359 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 DHX37Q8IY37 1157 aaKnown RBP9.93□□□□□ -0.82
USP3-208ENST00000558285 RASEFQ8IZ41 740 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 C22orf23Q9BZE7 217 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 C6orf50Q9HD87 102 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 RYDENQ9NUL5 291 aaKnown RBP9.93□□□□□ -0.82
USP3-208ENST00000558285 BRPF3Q9ULD4 1205 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 FIBPO43427 364 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 CYTH3O43739 400 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 HOXA13P31271 388 aaPredicted RBP9.93□□□□□ -0.82
USP3-208ENST00000558285 TLE2Q04725 743 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 AP3B2Q13367 1082 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 ITGA7Q13683 1181 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 PGM5Q15124 567 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 HABP4Q5JVS0 413 aaKnown RBP9.93□□□□□ -0.82
USP3-208ENST00000558285 VSIG10LQ86VR7 867 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 CCDC82Q8N4S0 544 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 TMEM199Q8N511 208 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 SRBD1Q8N5C6 995 aaKnown RBP9.93□□□□□ -0.82
USP3-208ENST00000558285 EMID1Q96A84 441 aaPredicted RBP9.93□□□□□ -0.82
USP3-208ENST00000558285 PHF12Q96QT6 1004 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 USP26Q9BXU7 913 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 MLXIPQ9HAP2 919 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 SENP2Q9HC62 589 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 ZSWIM6Q9HCJ5 1215 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 PDRG1Q9NUG6 133 aa9.93□□□□□ -0.82
USP3-208ENST00000558285 A6NJR5 290 aa9.92□□□□□ -0.82
USP3-208ENST00000558285 PLEKHA8P1O95397 391 aa9.92□□□□□ -0.82
USP3-208ENST00000558285 RXRAP19793 462 aa9.92□□□□□ -0.82
USP3-208ENST00000558285 ADCK5Q3MIX3 580 aa9.92□□□□□ -0.82
USP3-208ENST00000558285 PCNX4Q63HM2 1172 aa9.92□□□□□ -0.82
USP3-208ENST00000558285 CXCL17Q6UXB2 119 aa9.92□□□□□ -0.82
USP3-208ENST00000558285 WASF1Q92558 559 aa9.92□□□□□ -0.82
USP3-208ENST00000558285 LENG1Q96BZ8 264 aaPredicted RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms