RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 ERMNQ8TAM6 284 aa14.03□□□□□ -0.16
SHMT2-233ENST00000557529 TRERF1Q96PN7 1200 aa14.03□□□□□ -0.16
SHMT2-233ENST00000557529 MTRQ99707 1265 aa14.03□□□□□ -0.16
SHMT2-233ENST00000557529 GTPBP4Q9BZE4 634 aaKnown RBP14.03□□□□□ -0.16
SHMT2-233ENST00000557529 LRRC27Q9C0I9 530 aa14.03□□□□□ -0.16
SHMT2-233ENST00000557529 NT5C3AQ9H0P0 336 aa14.03□□□□□ -0.16
SHMT2-233ENST00000557529 ELP3Q9H9T3 547 aa14.03□□□□□ -0.16
SHMT2-233ENST00000557529 RPTORQ8N122 1335 aa14.03□□□□□ -0.16
SHMT2-233ENST00000557529 A0A0G2JLL6 359 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-233ENST00000557529 MSH4O15457 936 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 BMP6P22004 513 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 ERCC5P28715 1186 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-233ENST00000557529 MYL5Q02045 173 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 GRB10Q13322 594 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 PPIL2Q13356 520 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 TMEM119Q4V9L6 283 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 CEP55Q53EZ4 464 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 HYIQ5T013 277 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 HAUS3Q68CZ6 603 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 PRRT2Q7Z6L0 340 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-233ENST00000557529 PLA2G4DQ86XP0 818 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 SYTL5Q8TDW5 730 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-233ENST00000557529 STAMQ92783 540 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 CCDC47Q96A33 483 aaKnown RBP14.02□□□□□ -0.17
SHMT2-233ENST00000557529 PLIN2Q99541 437 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 TEX13BQ9BXU2 312 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 HOMER2Q9NSB8 354 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 RNF146Q9NTX7 359 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 CLEC11AQ9Y240 323 aa14.02□□□□□ -0.17
SHMT2-233ENST00000557529 PARP14Q460N5 1801 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 IGLV3-22A0A075B6J6 115 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 SPDYE16A6NNV3 312 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-233ENST00000557529 RPN1P04843 607 aaKnown RBP14.01□□□□□ -0.17
SHMT2-233ENST00000557529 HOXA7P31268 230 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-233ENST00000557529 CCT6AP40227 531 aaKnown RBP14.01□□□□□ -0.17
SHMT2-233ENST00000557529 CUL4BQ13620 913 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 KCNB1Q14721 858 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 HS1BP3Q53T59 392 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 MUM1L1Q5H9M0 696 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 SNRNP48Q6IEG0 339 aaKnown RBP14.01□□□□□ -0.17
SHMT2-233ENST00000557529 RNF207Q6ZRF8 634 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 SV2BQ7L1I2 683 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 NIPA1Q7RTP0 329 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 MB21D1Q8N884 522 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 OTUD5Q96G74 571 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 PNMA5Q96PV4 448 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 C7orf25Q9BPX7 421 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 TRIM5Q9C035 493 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 BLZF1Q9H2G9 400 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 ZNF214Q9UL59 606 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-233ENST00000557529 KCNH4Q9UQ05 1017 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 FRMPD4Q14CM0 1322 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 OTOFQ9HC10 1997 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 SMCHD1A6NHR9 2005 aa14.01□□□□□ -0.17
SHMT2-233ENST00000557529 MEIS1O00470 390 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 IRF6O14896 467 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 AP5Z1O43299 807 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 CASP1P29466 404 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 RPS6P62753 249 aaKnown RBP14□□□□□ -0.17
SHMT2-233ENST00000557529 SPIRE1Q08AE8 756 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 NCAPHQ15003 741 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 LDLRAD1Q5T700 205 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 PCNX4Q63HM2 1172 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 XRRA1Q6P2D8 792 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 GADL1Q6ZQY3 521 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14□□□□□ -0.17
SHMT2-233ENST00000557529 KCTD17Q8N5Z5 321 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 CNKSR2Q8WXI2 1034 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 LARP4BQ92615 738 aaKnown RBP14□□□□□ -0.17
SHMT2-233ENST00000557529 RAD54LQ92698 747 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 SLC5A5Q92911 643 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 WNK4Q96J92 1243 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 CLMNQ96JQ2 1002 aa14□□□□□ -0.17
SHMT2-233ENST00000557529 ZBTB4Q9P1Z0 1013 aaPredicted RBP14□□□□□ -0.17
SHMT2-233ENST00000557529 PTMAP06454 111 aaKnown RBP13.99□□□□□ -0.17
SHMT2-233ENST00000557529 BCRP11274 1271 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 STAT3P40763 770 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 ZNF75DP51815 510 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 PABPC4Q13310 644 aaKnown RBP eCLIP13.99□□□□□ -0.178e-7■■■■■ 32.8
SHMT2-233ENST00000557529 TMEM132BQ14DG7 1078 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 ZNF658Q5TYW1 1059 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-233ENST00000557529 NSMFQ6X4W1 530 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 MOB2Q70IA6 237 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 FASTKD5Q7L8L6 764 aaKnown RBP13.99□□□□□ -0.17
SHMT2-233ENST00000557529 CYP2W1Q8TAV3 490 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 ENOX1Q8TC92 643 aaKnown RBP13.99□□□□□ -0.17
SHMT2-233ENST00000557529 LRRC15Q8TF66 581 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 GJA10Q969M2 543 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 MXRA8Q9BRK3 442 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 WDR11Q9BZH6 1224 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 TRIM9Q9C026 710 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 ACAD9Q9H845 621 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 BLOC1S4Q9NUP1 217 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 COL20A1Q9P218 1284 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 VAV3Q9UKW4 847 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 RLFQ13129 1914 aa13.99□□□□□ -0.17
SHMT2-233ENST00000557529 GOLGA6L6A8MZA4 724 aa13.98□□□□□ -0.17
SHMT2-233ENST00000557529 CDC25BP30305 580 aa13.98□□□□□ -0.17
SHMT2-233ENST00000557529 FKBP1BP68106 108 aa13.98□□□□□ -0.17
SHMT2-233ENST00000557529 UBXN2AP68543 259 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms