RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 NEK8Q86SG6 692 aa18.05■□□□□ 0.48
SHMT2-232ENST00000557487 SUGP1Q8IWZ8 645 aaKnown RBP18.05■□□□□ 0.48
SHMT2-232ENST00000557487 STAG2Q8N3U4 1231 aa18.05■□□□□ 0.48
SHMT2-232ENST00000557487 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.05■□□□□ 0.48
SHMT2-232ENST00000557487 RIC8AQ9NPQ8 531 aa18.05■□□□□ 0.48
SHMT2-232ENST00000557487 GRID2IPA4D2P6 1211 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 hCG_1984214I3L0E3 225 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 EIF4A3P38919 411 aaKnown RBP18.04■□□□□ 0.48
SHMT2-232ENST00000557487 CFAP221Q4G0U5 840 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 EMC10Q5UCC4 262 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 HAUS3Q68CZ6 603 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 C8orf74Q6P047 294 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 PACS2Q86VP3 889 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 CERS3Q8IU89 383 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 ZNF713Q8N859 430 aaPredicted RBP18.04■□□□□ 0.48
SHMT2-232ENST00000557487 LRRC15Q8TF66 581 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 SEMA6BQ9H3T3 888 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 TAF1LQ8IZX4 1826 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 ESYT2A0FGR8 921 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 ZEB2O60315 1214 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 MOCS3O95396 460 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 B4GALNT4Q76KP1 1039 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 GSPT2Q8IYD1 628 aaKnown RBP18.04■□□□□ 0.48
SHMT2-232ENST00000557487 KIAA0895Q8NCT3 520 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 LINC00116Q8NCU8 138 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 PLIN2Q99541 437 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 TSG101Q99816 390 aa18.04■□□□□ 0.48
SHMT2-232ENST00000557487 CCDC88AQ3V6T2 1871 aa18.03■□□□□ 0.48
SHMT2-232ENST00000557487 ASTE1Q2TB18 679 aaPredicted RBP18.03■□□□□ 0.48
SHMT2-232ENST00000557487 KRT26Q7Z3Y9 468 aa18.03■□□□□ 0.48
SHMT2-232ENST00000557487 MREGQ8N565 214 aa18.03■□□□□ 0.48
SHMT2-232ENST00000557487 GDAP1L1Q96MZ0 367 aa18.03■□□□□ 0.48
SHMT2-232ENST00000557487 RAB34Q9BZG1 259 aa18.03■□□□□ 0.48
SHMT2-232ENST00000557487 YY1AP1Q9H869 796 aa18.03■□□□□ 0.48
SHMT2-232ENST00000557487 MKNK2Q9HBH9 465 aa18.03■□□□□ 0.48
SHMT2-232ENST00000557487 DMGDHQ9UI17 866 aaKnown RBP18.03■□□□□ 0.48
SHMT2-232ENST00000557487 SRRM3A6NNA2 597 aaPredicted RBP18.02■□□□□ 0.48
SHMT2-232ENST00000557487 CYTH3O43739 400 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 CCNT1O60563 726 aaKnown RBP18.02■□□□□ 0.48
SHMT2-232ENST00000557487 TSPY3P0CV98 308 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 TSPY8P0CW00 308 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 FCER1AP12319 257 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 FXR2P51116 673 aaKnown RBP eCLIP18.02■□□□□ 0.48
SHMT2-232ENST00000557487 PAK2Q13177 524 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 SEPT2Q15019 361 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 SOGA3Q5TF21 947 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 PDXDC1Q6P996 788 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 CD302Q8IX05 232 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 ZNF444Q8N0Y2 327 aaPredicted RBP18.02■□□□□ 0.48
SHMT2-232ENST00000557487 EIF1ADQ8N9N8 165 aaKnown RBP18.02■□□□□ 0.48
SHMT2-232ENST00000557487 BCAS4Q8TDM0 211 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 BAP1Q92560 729 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 MLXIPQ9HAP2 919 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 TFCP2L1Q9NZI6 479 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 QSER1Q2KHR3 1735 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 COL4A1P02462 1669 aa18.02■□□□□ 0.48
SHMT2-232ENST00000557487 NAPAP54920 295 aa18.02■□□□□ 0.47
SHMT2-232ENST00000557487 GNGT1P63211 74 aa18.02■□□□□ 0.47
SHMT2-232ENST00000557487 GSTO1P78417 241 aa18.02■□□□□ 0.47
SHMT2-232ENST00000557487 ERFEQ4G0M1 354 aa18.02■□□□□ 0.47
SHMT2-232ENST00000557487 RC3H1Q5TC82 1133 aaKnown RBP18.02■□□□□ 0.47
SHMT2-232ENST00000557487 DZIP1Q86YF9 867 aaKnown RBP18.02■□□□□ 0.47
SHMT2-232ENST00000557487 MMRN2Q9H8L6 949 aa18.02■□□□□ 0.47
SHMT2-232ENST00000557487 GDF3Q9NR23 364 aa18.02■□□□□ 0.47
SHMT2-232ENST00000557487 GRIN2DO15399 1336 aa18.01■□□□□ 0.47
SHMT2-232ENST00000557487 PLEKP08567 350 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-232ENST00000557487 CCT5P48643 541 aa18.01■□□□□ 0.47
SHMT2-232ENST00000557487 TMEM266Q2M3C6 531 aa18.01■□□□□ 0.47
SHMT2-232ENST00000557487 LETM2Q2VYF4 491 aa18.01■□□□□ 0.47
SHMT2-232ENST00000557487 NFRKBQ6P4R8 1299 aa18.01■□□□□ 0.47
SHMT2-232ENST00000557487 MMS22LQ6ZRQ5 1243 aa18.01■□□□□ 0.47
SHMT2-232ENST00000557487 RRAGAQ7L523 313 aa18.01■□□□□ 0.47
SHMT2-232ENST00000557487 ZFP91Q96JP5 570 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-232ENST00000557487 MMTAG2Q9BU76 263 aaKnown RBP18.01■□□□□ 0.47
SHMT2-232ENST00000557487 FAM169AQ9Y6X4 670 aa18.01■□□□□ 0.47
SHMT2-232ENST00000557487 BAZ2BQ9UIF8 2168 aaKnown RBP18.01■□□□□ 0.47
SHMT2-232ENST00000557487 CNTNAP4Q9C0A0 1308 aa18.01■□□□□ 0.47
SHMT2-232ENST00000557487 LRRC53A6NM62 1247 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 KLRF2D3W0D1 207 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 ERLIN2O94905 339 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 USP8P40818 1118 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 EVX2Q03828 476 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 PDIA5Q14554 519 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 SLC35G1Q2M3R5 365 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 SLC9C1Q4G0N8 1177 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 CACNA2D4Q7Z3S7 1137 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 FLAD1Q8NFF5 587 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 SMCR8Q8TEV9 937 aaPredicted RBP18■□□□□ 0.47
SHMT2-232ENST00000557487 HDAC7Q8WUI4 952 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 RRP36Q96EU6 259 aaKnown RBP18■□□□□ 0.47
SHMT2-232ENST00000557487 TLR10Q9BXR5 811 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 FAM207AQ9NSI2 230 aaPredicted RBP18■□□□□ 0.47
SHMT2-232ENST00000557487 CEP72Q9P209 647 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 SMCO2A6NFE2 343 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 CES2O00748 559 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 BAG3O95817 575 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 GNA14O95837 355 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 SERPING1P05155 500 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 USP17L8P0C7I0 530 aa18■□□□□ 0.47
SHMT2-232ENST00000557487 PRDX5P30044 214 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms