RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 FBXO22Q8NEZ5 403 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 EDAQ92838 391 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 UPF3BQ9BZI7 483 aaKnown RBP14.63□□□□□ -0.07
SHMT2-230ENST00000557427 VTA1Q9NP79 307 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 FEM1BQ9UK73 627 aa14.63□□□□□ -0.07
SHMT2-230ENST00000557427 IGKV6D-41A0A0C4DH26 115 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 CXCL10P02778 98 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 TSPY3P0CV98 308 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 TSPY8P0CW00 308 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 TFAP4Q01664 338 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 MUM1L1Q5H9M0 696 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 CNKSR3Q6P9H4 555 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 BANK1Q8NDB2 785 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 DHX38Q92620 1227 aaKnown RBP14.62□□□□□ -0.07
SHMT2-230ENST00000557427 CHMP4CQ96CF2 233 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 WDR11Q9BZH6 1224 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 CYP39A1Q9NYL5 469 aa14.62□□□□□ -0.07
SHMT2-230ENST00000557427 RBM47A0AV96 593 aaKnown RBP14.61□□□□□ -0.07
SHMT2-230ENST00000557427 FGAP02671 866 aa14.61□□□□□ -0.07
SHMT2-230ENST00000557427 CHMLP26374 656 aa14.61□□□□□ -0.07
SHMT2-230ENST00000557427 CPT1AP50416 773 aa14.61□□□□□ -0.07
SHMT2-230ENST00000557427 CWC27Q6UX04 472 aaKnown RBP14.61□□□□□ -0.07
SHMT2-230ENST00000557427 EP400NLQ6ZTU2 488 aa14.61□□□□□ -0.07
SHMT2-230ENST00000557427 ZNF589Q86UQ0 364 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-230ENST00000557427 MKL1Q969V6 931 aa14.61□□□□□ -0.07
SHMT2-230ENST00000557427 TRERF1Q96PN7 1200 aa14.61□□□□□ -0.07
SHMT2-230ENST00000557427 ESYT1Q9BSJ8 1104 aa14.61□□□□□ -0.07
SHMT2-230ENST00000557427 CACNA1HO95180 2353 aa14.61□□□□□ -0.07
SHMT2-230ENST00000557427 PTPRZ1P23471 2315 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-230ENST00000557427 DMDP11532 3685 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 MYO7AQ13402 2215 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 ABHD14A-ACY1A0A1B0GW23 586 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 TMEM221A6NGB7 291 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 M0R296 226 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 RANBP6O60518 1105 aaKnown RBP14.6□□□□□ -0.07
SHMT2-230ENST00000557427 HSPD1P10809 573 aaKnown RBP14.6□□□□□ -0.07
SHMT2-230ENST00000557427 PTPN11Q06124 597 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-230ENST00000557427 DLX2Q07687 328 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-230ENST00000557427 RABEP1Q15276 862 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 ALX1Q15699 326 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 SMAD2Q15796 467 aaKnown RBP14.6□□□□□ -0.07
SHMT2-230ENST00000557427 PTGISQ16647 500 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.6□□□□□ -0.074e-7■□□□□ 9.3
SHMT2-230ENST00000557427 TRIM67Q6ZTA4 783 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 LRRC8DQ7L1W4 858 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 OR6J1Q8NGC5 347 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 NEDD1Q8NHV4 660 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 AFAP1L1Q8TED9 768 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 PBXIP1Q96AQ6 731 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 CEP95Q96GE4 821 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 GPHNQ9NQX3 736 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-230ENST00000557427 TOMM22Q9NS69 142 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 MTMR4Q9NYA4 1195 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 KMT2EQ8IZD2 1858 aa14.6□□□□□ -0.07
SHMT2-230ENST00000557427 MYH4Q9Y623 1939 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 A6NJR5 290 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 ALAS1P13196 640 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 SELPP16109 830 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 SNAP25P60880 206 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 HAND2P61296 217 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 MKRN4PQ13434 485 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-230ENST00000557427 NBR1Q14596 966 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 CLUL1Q15846 466 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 EPC2Q52LR7 807 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 GDF6Q6KF10 455 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-230ENST00000557427 TRAF7Q6Q0C0 670 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 TICAM2Q86XR7 235 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 LRRC47Q8N1G4 583 aaKnown RBP14.59□□□□□ -0.07
SHMT2-230ENST00000557427 CAGE1Q8TC20 777 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 SP7Q8TDD2 431 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-230ENST00000557427 COPS5Q92905 334 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 DIAPH3Q9NSV4 1193 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 CLDND1Q9NY35 253 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 CTNNA3Q9UI47 895 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 NOD1Q9Y239 953 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 FAM50BQ9Y247 325 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 PLXNA3P51805 1871 aa14.59□□□□□ -0.07
SHMT2-230ENST00000557427 TSPY2A6NKD2 308 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 TMEM232C9JQI7 657 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 H3BNC9 293 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 MBTPS2O43462 519 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 TTLL1O95922 423 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 BMP3P12645 472 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 HTRA4P83105 476 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-230ENST00000557427 RBL2Q08999 1139 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 PTPROQ16827 1216 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 CTC1Q2NKJ3 1217 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 TKFCQ3LXA3 575 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 TIGD5Q53EQ6 642 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 RRP12Q5JTH9 1297 aaKnown RBP14.58□□□□□ -0.08
SHMT2-230ENST00000557427 RPAINQ86UA6 219 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 GMCL1P1Q8NEA9 526 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 PRRX2Q99811 253 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 ISY1Q9ULR0 285 aaKnown RBP14.58□□□□□ -0.08
SHMT2-230ENST00000557427 INSL6Q9Y581 213 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 CCDC171Q6TFL3 1326 aa14.58□□□□□ -0.08
SHMT2-230ENST00000557427 ATG2AQ2TAZ0 1938 aa14.57□□□□□ -0.08
SHMT2-230ENST00000557427 NMT2O60551 498 aa14.57□□□□□ -0.08
SHMT2-230ENST00000557427 FDX1P10109 184 aa14.57□□□□□ -0.08
SHMT2-230ENST00000557427 CKBP12277 381 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms