RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 ANKRD13DQ6ZTN6 518 aa9.53□□□□□ -0.88
SYNE3-205ENST00000557275 EFHBQ8N7U6 833 aa9.53□□□□□ -0.88
SYNE3-205ENST00000557275 SYNJ1O43426 1573 aa9.53□□□□□ -0.88
SYNE3-205ENST00000557275 MAP4P27816 1152 aaKnown RBP9.53□□□□□ -0.88
SYNE3-205ENST00000557275 SMARCA1P28370 1054 aa9.53□□□□□ -0.88
SYNE3-205ENST00000557275 TYW1BQ6NUM6 668 aa9.53□□□□□ -0.88
SYNE3-205ENST00000557275 MIGA1Q8NAN2 632 aa9.53□□□□□ -0.88
SYNE3-205ENST00000557275 NCLNQ969V3 563 aa9.53□□□□□ -0.88
SYNE3-205ENST00000557275 TRPV6Q9H1D0 765 aa9.53□□□□□ -0.88
SYNE3-205ENST00000557275 TMOD1P28289 359 aa9.52□□□□□ -0.88
SYNE3-205ENST00000557275 ATXN3P54252 364 aaPredicted RBP9.52□□□□□ -0.88
SYNE3-205ENST00000557275 STRIP2Q9ULQ0 834 aa9.52□□□□□ -0.88
SYNE3-205ENST00000557275 IKBIPQ70UQ0 350 aa9.52□□□□□ -0.88
SYNE3-205ENST00000557275 RRAGAQ7L523 313 aa9.52□□□□□ -0.88
SYNE3-205ENST00000557275 NOSTRINQ8IVI9 506 aa9.52□□□□□ -0.88
SYNE3-205ENST00000557275 GRAMD1AQ96CP6 724 aa9.52□□□□□ -0.88
SYNE3-205ENST00000557275 QKIQ96PU8 341 aaKnown RBP eCLIP9.52□□□□□ -0.88
SYNE3-205ENST00000557275 CCDC90BQ9GZT6 254 aa9.52□□□□□ -0.88
SYNE3-205ENST00000557275 MCM9Q9NXL9 1143 aa9.52□□□□□ -0.88
SYNE3-205ENST00000557275 KIF21AQ7Z4S6 1674 aa9.52□□□□□ -0.88
SYNE3-205ENST00000557275 MYO1FO00160 1098 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 RHOBTB1O94844 696 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 RPSAP08865 295 aaKnown RBP9.52□□□□□ -0.89
SYNE3-205ENST00000557275 TRIM67Q6ZTA4 783 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.52□□□□□ -0.89
SYNE3-205ENST00000557275 ZNF148Q9UQR1 794 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 VGLL3A8MV65 326 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 THOC5Q13769 683 aaKnown RBP9.52□□□□□ -0.89
SYNE3-205ENST00000557275 LDHBP07195 334 aaKnown RBP9.52□□□□□ -0.89
SYNE3-205ENST00000557275 CIITAP33076 1130 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 ETF1P62495 437 aaKnown RBP9.52□□□□□ -0.89
SYNE3-205ENST00000557275 POTEAQ6S8J7 498 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 SMARCA5O60264 1052 aaPredicted RBP9.52□□□□□ -0.89
SYNE3-205ENST00000557275 ECEL1O95672 775 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 PTK2Q05397 1052 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 PARVGQ9HBI0 331 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 ATAD2BQ9ULI0 1458 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 IFT140Q96RY7 1462 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 HSPA13P48723 471 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 AP1S2P56377 157 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 LETM2Q2VYF4 491 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 ZNF555Q8NEP9 628 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 FANCEQ9HB96 536 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 SMYD2Q9NRG4 433 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 TK2O00142 265 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 NR1D1P20393 614 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 CENPUQ71F23 418 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 NEK9Q8TD19 979 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 SETDB2Q96T68 719 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 NBNO60934 754 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 PAPOLBQ9NRJ5 636 aaKnown RBP9.52□□□□□ -0.89
SYNE3-205ENST00000557275 SENP1Q9P0U3 644 aa9.52□□□□□ -0.89
SYNE3-205ENST00000557275 FBXW4P57775 412 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 FRA10AC1Q70Z53 315 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 CHMP2BQ9UQN3 213 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 NAIPQ13075 1403 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 KCNJ18B7U540 433 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 SGK1O00141 431 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 IL10P22301 178 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 RBM6P78332 1123 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 KCNJ12Q14500 433 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 CREB3L3Q68CJ9 461 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 LRRIQ3A6PVS8 624 aaPredicted RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 PSMC1P62191 440 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 ARL13BQ3SXY8 428 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 ATP5J2-PTCD1G3V325 749 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 PTCD1O75127 700 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 SNX19Q92543 992 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 ZNF274Q96GC6 653 aaPredicted RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 PDE11AQ9HCR9 933 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 ST7Q9NRC1 585 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 DENND2AQ9ULE3 1009 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 SYNGAP1Q96PV0 1343 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 PAPOLAP51003 745 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 ITKQ08881 620 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 PLD3Q8IV08 490 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 SOX6P35712 828 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 CPSF3Q9UKF6 684 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 RNASE9P60153 205 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 SYT2Q8N9I0 419 aaPredicted RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 CNPY3Q9BT09 278 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 RPRD1BQ9NQG5 326 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 SFMBT1Q9UHJ3 866 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 NFU1Q9UMS0 254 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 ADCY7P51828 1080 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 MAML1Q92585 1016 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 MRPL48Q96GC5 212 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 MAP3K15Q6ZN16 1313 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 MT-ND3P03897 115 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 CCDC85BQ15834 202 aaPredicted RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 AASDHQ4L235 1098 aaPredicted RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 TTC38Q5R3I4 469 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 ARHGEF1Q92888 912 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 RMDN1Q96DB5 314 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 THAP11Q96EK4 314 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 FGD5Q6ZNL6 1462 aa9.51□□□□□ -0.89
SYNE3-205ENST00000557275 S100A9P06702 114 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 PCP11498 1178 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 CSTF3Q12996 717 aaKnown RBP9.51□□□□□ -0.89
SYNE3-205ENST00000557275 THOC7Q6I9Y2 204 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms