RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 PPP2R5BQ15173 497 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 LRRFIP1Q32MZ4 808 aaKnown RBP11.03□□□□□ -0.64
SYNE2-224ENST00000557024 PUS10Q3MIT2 529 aaKnown RBP11.03□□□□□ -0.64
SYNE2-224ENST00000557024 ZSCAN25Q6NSZ9 544 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 CNKSR3Q6P9H4 555 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 EP400NLQ6ZTU2 488 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 LRRC8DQ7L1W4 858 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 RASGRP2Q7LDG7 609 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 CCDC155Q8N6L0 562 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 AFAP1L1Q8TED9 768 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 COPS5Q92905 334 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 C17orf80Q9BSJ5 609 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 ZNF287Q9HBT7 754 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 EPB41L4AQ9HCS5 686 aaPredicted RBP11.03□□□□□ -0.64
SYNE2-224ENST00000557024 ADD3Q9UEY8 706 aaKnown RBP11.03□□□□□ -0.64
SYNE2-224ENST00000557024 PRR12Q9ULL5 1215 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 RAD50Q92878 1312 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 RBM47A0AV96 593 aaKnown RBP11.02□□□□□ -0.65
SYNE2-224ENST00000557024 A6NJR5 290 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 NFIBO00712 420 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 KPNA6O60684 536 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 NBNO60934 754 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 TDO2P48775 406 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 ZP2Q05996 745 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 C20orf194Q5TEA3 1177 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 GDF6Q6KF10 455 aaPredicted RBP11.02□□□□□ -0.65
SYNE2-224ENST00000557024 GIMAP6Q6P9H5 292 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 POTEGQ6S5H5 508 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 TMEM92Q6UXU6 159 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 NEDD1Q8NHV4 660 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 CAGE1Q8TC20 777 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 NEK9Q8TD19 979 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 DHX38Q92620 1227 aaKnown RBP11.02□□□□□ -0.65
SYNE2-224ENST00000557024 CTAGE1Q96RT6 745 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 DDX19BQ9UMR2 479 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 MTMR7Q9Y216 660 aa11.02□□□□□ -0.65
SYNE2-224ENST00000557024 ABHD14A-ACY1A0A1B0GW23 586 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 PTPDC1A2A3K4 754 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 PLA2G6O60733 806 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 APPP05067 770 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 ICAM1P05362 532 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 CALML3P27482 149 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 TFAP4Q01664 338 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 PDE4DQ08499 809 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 SLC30A10Q6XR72 485 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 OSBP2Q969R2 916 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 MRPL38Q96DV4 380 aaKnown RBP11.01□□□□□ -0.65
SYNE2-224ENST00000557024 PLIN4Q96Q06 1357 aa11.01□□□□□ -0.65
SYNE2-224ENST00000557024 TANC1Q9C0D5 1861 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 NKRFO15226 690 aaKnown RBP eCLIP11□□□□□ -0.65
SYNE2-224ENST00000557024 CXCL10P02778 98 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 TXNP10599 105 aaKnown RBP11□□□□□ -0.65
SYNE2-224ENST00000557024 CKBP12277 381 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 IKBKEQ14164 716 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 PTPROQ16827 1216 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 TIGD5Q53EQ6 642 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 RCSD1Q6JBY9 416 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 ADHFE1Q8IWW8 467 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 SCFD2Q8WU76 684 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 MFSD14AQ96MC6 490 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 SLC24A3Q9HC58 644 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 PRKAG3Q9UGI9 489 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 STX8Q9UNK0 236 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 FAM50BQ9Y247 325 aa11□□□□□ -0.65
SYNE2-224ENST00000557024 GPAA1O43292 621 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 EFCAB14O75071 495 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 RAB11FIP3O75154 756 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 ARIH2O95376 493 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 IRS1P35568 1242 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 SLC16A2P36021 539 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 PDE4BQ07343 736 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 CCDC96Q2M329 555 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 TCEAL5Q5H9L2 206 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.99□□□□□ -0.65
SYNE2-224ENST00000557024 SIRT2Q8IXJ6 389 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 BANK1Q8NDB2 785 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 PRSS33Q8NF86 280 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 EXOC6Q8TAG9 804 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 AFG1LQ8WV93 481 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 APPBP2Q92624 585 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 PABPC5Q96DU9 382 aaKnown RBP10.99□□□□□ -0.65
SYNE2-224ENST00000557024 UPF3BQ9BZI7 483 aaKnown RBP10.99□□□□□ -0.65
SYNE2-224ENST00000557024 CTNNA3Q9UI47 895 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 MUTYHQ9UIF7 546 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 INSL6Q9Y581 213 aa10.99□□□□□ -0.65
SYNE2-224ENST00000557024 LOC102724159A0A0B4J2E5 919 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 M0R2C6 588 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 ST18O60284 1047 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 NMT2O60551 498 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 HMMRO75330 724 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 PARNO95453 639 aaKnown RBP10.98□□□□□ -0.65
SYNE2-224ENST00000557024 RBL2Q08999 1139 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 PWP2Q15269 919 aaKnown RBP10.98□□□□□ -0.65
SYNE2-224ENST00000557024 CLUL1Q15846 466 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 EPC2Q52LR7 807 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 TTBK2Q6IQ55 1244 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 RNF207Q6ZRF8 634 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 SESTD1Q86VW0 696 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 MYOCDQ8IZQ8 938 aa10.98□□□□□ -0.65
SYNE2-224ENST00000557024 TET1Q8NFU7 2136 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms