RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 DOCK5Q9H7D0 1870 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 UMODL1Q5DID0 1318 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 hCG_1642624A0A1W2PR95 340 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 MEIS2O14770 477 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 B4GALT4O60513 344 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 EIF3JO75822 258 aaKnown RBP11.93□□□□□ -0.5
SHMT2-224ENST00000556737 TIMP1P01033 207 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 GH1P01241 217 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 MMP3P08254 477 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 MYL3P08590 195 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 CPA1P15085 419 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 FPGSQ05932 587 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 VSIG10LQ86VR7 867 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 FANCBQ8NB91 859 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 EMID1Q96A84 441 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-224ENST00000556737 VTI1AQ96AJ9 217 aa11.93□□□□□ -0.5
SHMT2-224ENST00000556737 MTG1Q9BT17 334 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-224ENST00000556737 ALDH8A1Q9H2A2 487 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-224ENST00000556737 SEC63Q9UGP8 760 aaKnown RBP11.93□□□□□ -0.5
SHMT2-224ENST00000556737 DDX41Q9UJV9 622 aaKnown RBP11.93□□□□□ -0.5
SHMT2-224ENST00000556737 CDH23Q9H251 3354 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 MYH7BA7E2Y1 1941 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 PIK3CDO00329 1044 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 TLR3O15455 904 aaKnown RBP11.92□□□□□ -0.5
SHMT2-224ENST00000556737 UBA1P22314 1058 aaKnown RBP11.92□□□□□ -0.5
SHMT2-224ENST00000556737 MRPS9P82933 396 aaKnown RBP11.92□□□□□ -0.5
SHMT2-224ENST00000556737 MFSD5Q6N075 450 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 GPR153Q6NV75 609 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 FCHSD1Q86WN1 690 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 PPP1R13LQ8WUF5 828 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 AFG1LQ8WV93 481 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 GPKOWQ92917 476 aaPredicted RBP eCLIP11.92□□□□□ -0.5
SHMT2-224ENST00000556737 ZFP91Q96JP5 570 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-224ENST00000556737 JAKMIP1Q96N16 626 aaKnown RBP11.92□□□□□ -0.5
SHMT2-224ENST00000556737 SEZ6LQ9BYH1 1024 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 PPP1R12CQ9BZL4 782 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 TRPV6Q9H1D0 765 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 FAM217BQ9NTX9 383 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-224ENST00000556737 MRVI1Q9Y6F6 885 aa11.92□□□□□ -0.5
SHMT2-224ENST00000556737 KLF18A0A0U1RQI7 1052 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 ZBTB43O43298 467 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 HMGB1P09429 215 aaKnown RBP11.91□□□□□ -0.5
SHMT2-224ENST00000556737 MYCLP12524 364 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-224ENST00000556737 HOXD8P13378 290 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-224ENST00000556737 CDC27P30260 824 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 CCND2P30279 289 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 RCAN1P53805 252 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 SEMA3FQ13275 785 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 RTN1Q16799 776 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 NBPF20Q3BBV1 942 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 WWC2Q6AWC2 1192 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 TYW1BQ6NUM6 668 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 USP17L6PQ6QN14 398 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 CCDC82Q8N4S0 544 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 PPTC7Q8NI37 304 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 KAT2BQ92831 832 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 INPP4AQ96PE3 977 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-224ENST00000556737 NOC4LQ9BVI4 516 aaKnown RBP11.91□□□□□ -0.5
SHMT2-224ENST00000556737 AGXT2Q9BYV1 514 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 WNT8AQ9H1J5 351 aa11.91□□□□□ -0.5
SHMT2-224ENST00000556737 TRMT13Q9NUP7 481 aaKnown RBP11.91□□□□□ -0.5
SHMT2-224ENST00000556737 RBM28Q9NW13 759 aaKnown RBP11.91□□□□□ -0.5
SHMT2-224ENST00000556737 GOLGA8AA7E2F4 631 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 GOLGA8BA8MQT2 603 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 EPB41L2O43491 1005 aaKnown RBP11.9□□□□□ -0.5
SHMT2-224ENST00000556737 KPNA6O60684 536 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 REC8O95072 547 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 CSF2RAP15509 400 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 RPS6KB1P23443 525 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 ICAM3P32942 547 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 CYP2C18P33260 490 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 SP2Q02086 613 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 SCN5AQ14524 2016 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 UBE2SQ16763 222 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 BRDTQ58F21 947 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-224ENST00000556737 NFRKBQ6P4R8 1299 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 C16orf59Q7L2K0 433 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 FBXL16Q8N461 479 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 VWCEQ96DN2 955 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 CTAGE1Q96RT6 745 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.9□□□□□ -0.53e-9■□□□□ 10
SHMT2-224ENST00000556737 HIPK3Q9H422 1215 aa11.9□□□□□ -0.5
SHMT2-224ENST00000556737 STAM2O75886 525 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 GGPS1O95749 300 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 F2P00734 622 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 ZNF286BP0CG31 522 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 CYP2C9P11712 490 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 APOBRQ0VD83 1088 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 HSDL1Q3SXM5 330 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 CELF3Q5SZQ8 465 aaKnown RBP11.89□□□□□ -0.51
SHMT2-224ENST00000556737 RASIP1Q5U651 963 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 MYSM1Q5VVJ2 828 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 PCNX4Q63HM2 1172 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 PPP1R18Q6NYC8 613 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 BLOC1S2Q6QNY1 142 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 SYNE3Q6ZMZ3 975 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 Q6ZUG5 572 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 Q7L0L9 218 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 HEATR3Q7Z4Q2 680 aa11.89□□□□□ -0.51
SHMT2-224ENST00000556737 SESTD1Q86VW0 696 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms