RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 SEPT14Q6ZU15 432 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 DHX32Q7L7V1 743 aaKnown RBP13.68□□□□□ -0.22
VRK1-204ENST00000555351 DEFB123Q8N688 67 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 FANCBQ8NB91 859 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 KCNB2Q92953 911 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 HIPK3Q9H422 1215 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 MRVI1Q9Y6F6 885 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 SZT2Q5T011 3432 aa13.68□□□□□ -0.22
VRK1-204ENST00000555351 TMEM265A0A087WTH1 108 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 B4GALT4O60513 344 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 NEFLP07196 543 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 HOXD8P13378 290 aaPredicted RBP13.67□□□□□ -0.22
VRK1-204ENST00000555351 CASTP20810 708 aaKnown RBP13.67□□□□□ -0.22
VRK1-204ENST00000555351 EPHB4P54760 987 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 PSMC6P62333 389 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 DGKDQ16760 1214 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 RASIP1Q5U651 963 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 ERICH6BQ5W0A0 696 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 PSRC1Q6PGN9 363 aaPredicted RBP13.67□□□□□ -0.22
VRK1-204ENST00000555351 SESTD1Q86VW0 696 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 SRBD1Q8N5C6 995 aaKnown RBP13.67□□□□□ -0.22
VRK1-204ENST00000555351 PPTC7Q8NI37 304 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 RNPC3Q96LT9 517 aaKnown RBP13.67□□□□□ -0.22
VRK1-204ENST00000555351 NOC4LQ9BVI4 516 aaKnown RBP13.67□□□□□ -0.22
VRK1-204ENST00000555351 RBM28Q9NW13 759 aaKnown RBP13.67□□□□□ -0.22
VRK1-204ENST00000555351 MTMR10Q9NXD2 777 aa13.67□□□□□ -0.22
VRK1-204ENST00000555351 PPFIA4O75335 1185 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 RGS20O76081 388 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 MMP3P08254 477 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 HOXA13P31271 388 aaPredicted RBP13.66□□□□□ -0.22
VRK1-204ENST00000555351 LY6KQ17RY6 165 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 NBPF20Q3BBV1 942 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 GNPTABQ3T906 1256 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 APOA5Q6Q788 366 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 TMTC3Q6ZXV5 915 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 SKAP1Q86WV1 359 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 FBXL16Q8N461 479 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 AFG1LQ8WV93 481 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 COPS5Q92905 334 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 CUL5Q93034 780 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 MYL10Q9BUA6 226 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 KATNAL1Q9BW62 490 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 TRPV6Q9H1D0 765 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 IL23AQ9NPF7 189 aa13.66□□□□□ -0.22
VRK1-204ENST00000555351 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 hCG_1984214I3L0E3 225 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 PITPNM1O00562 1244 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 REC8O95072 547 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 PLEKHA8P1O95397 391 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 PFKMP08237 780 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 MYCLP12524 364 aaPredicted RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 CSF2RAP15509 400 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 ICAM3P32942 547 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 COL9A3Q14050 684 aaPredicted RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 TMEM240Q5SV17 173 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 CELF3Q5SZQ8 465 aaKnown RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 MYSM1Q5VVJ2 828 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 DHX37Q8IY37 1157 aaKnown RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 RASEFQ8IZ41 740 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 RPUSD2Q8IZ73 545 aaKnown RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 ZNF713Q8N859 430 aaPredicted RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 INPP4AQ96PE3 977 aaPredicted RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.65□□□□□ -0.22
VRK1-204ENST00000555351 MTIF3Q9H2K0 278 aaKnown RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 STXBP5LQ9Y2K9 1186 aa13.65□□□□□ -0.22
VRK1-204ENST00000555351 BAZ2BQ9UIF8 2168 aaKnown RBP13.65□□□□□ -0.22
VRK1-204ENST00000555351 MEIS2O14770 477 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 F2P00734 622 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 CYP2C18P33260 490 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 HSPA4P34932 840 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 RFC2P35250 354 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 ZNF697Q5TEC3 545 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 PCNX4Q63HM2 1172 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 C16orf59Q7L2K0 433 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 FCHSD1Q86WN1 690 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 IL31RAQ8NI17 732 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 SMARCC2Q8TAQ2 1214 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 HERVK_113Q902F9 699 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 PPP1R12CQ9BZL4 782 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 PSTPIP2Q9H939 334 aa13.64□□□□□ -0.23
VRK1-204ENST00000555351 SPATA31C2B4DYI2 1134 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 HAS3O00219 553 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 ZBTB43O43298 467 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 FIBPO43427 364 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 MRPS9P82933 396 aaKnown RBP13.63□□□□□ -0.23
VRK1-204ENST00000555351 RBL2Q08999 1139 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 BFSP2Q13515 415 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 NEDD9Q14511 834 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 ADCK5Q3MIX3 580 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 FAM47CQ5HY64 1035 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 PPP1R18Q6NYC8 613 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 MICU3Q86XE3 530 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 CCDC155Q8N6L0 562 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 KAT2BQ92831 832 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 SENP7Q9BQF6 1050 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 LRRC2Q9BYS8 371 aa13.63□□□□□ -0.23
VRK1-204ENST00000555351 TRMT13Q9NUP7 481 aaKnown RBP13.63□□□□□ -0.23
VRK1-204ENST00000555351 NID2Q14112 1375 aa13.62□□□□□ -0.23
VRK1-204ENST00000555351 CCDC196A0A1B0GTZ2 297 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms