RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 MYCNP04198 464 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-217ENST00000555116 CST5P28325 142 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-217ENST00000555116 CCND2P30279 289 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 RABEP1Q15276 862 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 CCSAPQ6IQ19 270 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-217ENST00000555116 CCDC62Q6P9F0 684 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 SEPT14Q6ZU15 432 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 RNF180Q86T96 592 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 ZMYND12Q9H0C1 365 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 LIMCH1Q9UPQ0 1083 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 Q9Y3F1 56 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 DOCK5Q9H7D0 1870 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 ADAMTS3O15072 1205 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 DEXIO95424 95 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 CLK2P49760 499 aaKnown RBP16.31■□□□□ 0.2
SHMT2-217ENST00000555116 MRPS9P82933 396 aaKnown RBP16.31■□□□□ 0.2
SHMT2-217ENST00000555116 ST3GAL1Q11201 340 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 TLK2Q86UE8 772 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 GLT8D2Q9H1C3 349 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 PCDHA6Q9UN73 950 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 PHF24Q9UPV7 400 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 PCDHA8Q9Y5H6 950 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 DTNBO60941 627 aa16.3■□□□□ 0.2
SHMT2-217ENST00000555116 CDKL5O76039 1030 aa16.3■□□□□ 0.2
SHMT2-217ENST00000555116 C6orf222P0C671 652 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-217ENST00000555116 TTLL4Q14679 1199 aa16.3■□□□□ 0.2
SHMT2-217ENST00000555116 CCDC12Q8WUD4 166 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-217ENST00000555116 ZFP91Q96JP5 570 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-217ENST00000555116 TSEN34Q9BSV6 310 aaKnown RBP16.3■□□□□ 0.2
SHMT2-217ENST00000555116 SH3GLB2Q9NR46 395 aa16.3■□□□□ 0.2
SHMT2-217ENST00000555116 STK36Q9NRP7 1315 aa16.3■□□□□ 0.2
SHMT2-217ENST00000555116 VPS54Q9P1Q0 977 aa16.3■□□□□ 0.2
SHMT2-217ENST00000555116 NKRFO15226 690 aaKnown RBP eCLIP16.29■□□□□ 0.2
SHMT2-217ENST00000555116 DYNC1LI2O43237 492 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-217ENST00000555116 TXNP10599 105 aaKnown RBP16.29■□□□□ 0.2
SHMT2-217ENST00000555116 PCNX4Q63HM2 1172 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 COPS5Q92905 334 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 AIFM3Q96NN9 605 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 HTATIP2Q9BUP3 242 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 SENP6Q9GZR1 1112 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-217ENST00000555116 AP5M1Q9H0R1 490 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 SPC25Q9HBM1 224 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 TMEM260Q9NX78 707 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 SPDYE3A6NKU9 549 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 BEX3Q00994 111 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 KCNA10Q16322 511 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 XRRA1Q6P2D8 792 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 CCDC148Q8NFR7 591 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 C6orf50Q9HD87 102 aa16.29■□□□□ 0.2
SHMT2-217ENST00000555116 DDX41Q9UJV9 622 aaKnown RBP16.29■□□□□ 0.2
SHMT2-217ENST00000555116 CEP290O15078 2479 aa16.28■□□□□ 0.2
SHMT2-217ENST00000555116 STAM2O75886 525 aa16.28■□□□□ 0.2
SHMT2-217ENST00000555116 FOSP01100 380 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-217ENST00000555116 AP3B2Q13367 1082 aa16.28■□□□□ 0.2
SHMT2-217ENST00000555116 FSCN1Q16658 493 aaKnown RBP16.28■□□□□ 0.2
SHMT2-217ENST00000555116 GNASQ5JWF2 1037 aa16.28■□□□□ 0.2
SHMT2-217ENST00000555116 NSUN7Q8NE18 718 aaKnown RBP16.28■□□□□ 0.2
SHMT2-217ENST00000555116 PGBD1Q96JS3 809 aa16.28■□□□□ 0.2
SHMT2-217ENST00000555116 INPP4AQ96PE3 977 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-217ENST00000555116 FDPSP14324 419 aaKnown RBP16.27■□□□□ 0.2
SHMT2-217ENST00000555116 ACLYP53396 1101 aa16.27■□□□□ 0.2
SHMT2-217ENST00000555116 LY6KQ17RY6 165 aa16.27■□□□□ 0.2
SHMT2-217ENST00000555116 PCSK9Q8NBP7 692 aaKnown RBP16.27■□□□□ 0.2
SHMT2-217ENST00000555116 OR6J1Q8NGC5 347 aa16.27■□□□□ 0.2
SHMT2-217ENST00000555116 FERMT2Q96AC1 680 aa16.27■□□□□ 0.2
SHMT2-217ENST00000555116 ZSCAN31Q96LW9 406 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-217ENST00000555116 ANO3Q9BYT9 981 aa16.27■□□□□ 0.2
SHMT2-217ENST00000555116 ORC3Q9UBD5 711 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-217ENST00000555116 MRVI1Q9Y6F6 885 aa16.27■□□□□ 0.2
SHMT2-217ENST00000555116 MOXD2PA6NHM9 499 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 GNA11P29992 359 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 ICAM3P32942 547 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 ARHGAP1Q07960 439 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 SEMA3FQ13275 785 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 LRRC26Q2I0M4 334 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 JAKMIP3Q5VZ66 844 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 FAM177A1Q8N128 213 aaPredicted RBP16.27■□□□□ 0.19
SHMT2-217ENST00000555116 IL27Q8NEV9 243 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 EHMT1Q9H9B1 1298 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 RTEL1Q9NZ71 1219 aa16.27■□□□□ 0.19
SHMT2-217ENST00000555116 SCN10AQ9Y5Y9 1956 aa16.26■□□□□ 0.19
SHMT2-217ENST00000555116 A0A1W2PQ45 241 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-217ENST00000555116 A0A1W2PQY0 241 aa16.26■□□□□ 0.19
SHMT2-217ENST00000555116 GH1P01241 217 aa16.26■□□□□ 0.19
SHMT2-217ENST00000555116 ASGR1P07306 291 aa16.26■□□□□ 0.19
SHMT2-217ENST00000555116 NPY5RQ15761 445 aa16.26■□□□□ 0.19
SHMT2-217ENST00000555116 KCNV1Q6PIU1 500 aa16.26■□□□□ 0.19
SHMT2-217ENST00000555116 REXO1Q8N1G1 1221 aaKnown RBP16.26■□□□□ 0.19
SHMT2-217ENST00000555116 SH2B1Q9NRF2 756 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-217ENST00000555116 UBIAD1Q9Y5Z9 338 aa16.26■□□□□ 0.19
SHMT2-217ENST00000555116 SPATA31C2B4DYI2 1134 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 ST18O60284 1047 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 JAK2O60674 1132 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 CD2BP2O95400 341 aaKnown RBP16.25■□□□□ 0.19
SHMT2-217ENST00000555116 TGFB3P10600 412 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 SREBF1P36956 1147 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 ATN1P54259 1190 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-217ENST00000555116 NLRP5P59047 1200 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 SP2Q02086 613 aa16.25■□□□□ 0.19
SHMT2-217ENST00000555116 GNPTABQ3T906 1256 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms