RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	SLC15A2	Q16348	729 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	PLEKHN1	Q494U1	663 aa	Predicted RBP	3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	HSF5	Q4G112	596 aa	Predicted RBP	3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	RPTN	Q6XPR3	784 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	RETREG2	Q8NC44	543 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	ZNF526	Q8TF50	670 aa	Predicted RBP	3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	DVL3	Q92997	716 aa	Predicted RBP	3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	RBCK1	Q9BYM8	510 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	FOXP3	Q9BZS1	431 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	PRDM14	Q9GZV8	571 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	TNFRSF12A	Q9NP84	129 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	THRAP3	Q9Y2W1	955 aa	Known RBP	3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	TAF6L	Q9Y6J9	622 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	PMF1-BGLAP	U3KQ54	211 aa		3.55	□□□□□ -1.84
PTCH1-223	ENST00000551623	BRD4	O60885	1362 aa	Predicted RBP	3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	PNMA6F	A0A0J9YX94	578 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	HTRA3	P83110	453 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	FOXO4	P98177	505 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	ZNF200	P98182	395 aa	Predicted RBP	3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	TTBK2	Q6IQ55	1244 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	ZC3H14	Q6PJT7	736 aa	Known RBP	3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	TMC7	Q7Z402	723 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	CHST13	Q8NET6	341 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	ENOX1	Q8TC92	643 aa	Known RBP	3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	KREMEN1	Q96MU8	473 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	ASPN	Q9BXN1	380 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	HDAC8	Q9BY41	377 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	OSBPL7	Q9BZF2	842 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	LRRC37A3	O60309	1634 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	TRPM1	Q7Z4N2	1603 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	CIC	Q96RK0	1608 aa	Predicted RBP	3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	TULP4	Q9NRJ4	1543 aa		3.54	□□□□□ -1.84
PTCH1-223	ENST00000551623	GOLGB1	Q14789	3259 aa	Known RBP	3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	KIAA0232	Q92628	1395 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	PHRF1	Q9P1Y6	1649 aa	Known RBP	3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	SSU72P8	A0A1W2PR75	194 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	WTIP	A6NIX2	430 aa	Predicted RBP	3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	FADS2P1	A8MWK0	482 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	UPK3BL1	B0FP48	263 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	UPK3BL2	E5RIL1	263 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	PLAT	P00750	562 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	PRKCA	P17252	672 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	CYP4F8	P98187	520 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	DSC3	Q14574	896 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	TARBP2	Q15633	366 aa	Known RBP	3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	GPR162	Q16538	588 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	ZPBP2	Q6X784	338 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	SV2B	Q7L1I2	683 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	CARF	Q8N187	725 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	TCP11L2	Q8N4U5	519 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	FAM13C	Q8NE31	585 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	SYTL5	Q8TDW5	730 aa	Predicted RBP	3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	TCTN2	Q96GX1	697 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	ARID3A	Q99856	593 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	ASCC2	Q9H1I8	757 aa	Predicted RBP	3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	VPS11	Q9H270	941 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	TCFL5	Q9UL49	500 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	PCDHB5	Q9Y5E4	795 aa		3.53	□□□□□ -1.84
PTCH1-223	ENST00000551623	QSER1	Q2KHR3	1735 aa		3.53	□□□□□ -1.85
PTCH1-223	ENST00000551623	PIK3C2G	O75747	1445 aa		3.53	□□□□□ -1.85
PTCH1-223	ENST00000551623	C10orf71	Q711Q0	1435 aa		3.53	□□□□□ -1.85
PTCH1-223	ENST00000551623	NUP155	O75694	1391 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	PLEKHH1	Q9ULM0	1364 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	USP19	O94966	1318 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	SOWAHD	A6NJG2	315 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	FKTN	O75072	461 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	TOMM70	O94826	608 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	LMNB1	P20700	586 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	TNNI2	P48788	182 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	MAPKAPK2	P49137	400 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	YARS	P54577	528 aa	Known RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	PCBP3	P57721	371 aa	Known RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	RPS26	P62854	115 aa	Known RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	DLX2	Q07687	328 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	NMI	Q13287	307 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	ENOX2	Q16206	610 aa	Known RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	TXNRD1	Q16881	649 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	BBS9	Q3SYG4	887 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	DAGLB	Q8NCG7	672 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	FCRL2	Q96LA5	508 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	ZNF747	Q9BV97	191 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	PRDM11	Q9NQV5	511 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	STK32B	Q9NY57	414 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	TNFRSF10D	Q9UBN6	386 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	GPR55	Q9Y2T6	319 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	TSC22D4	Q9Y3Q8	395 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	PPL	O60437	1756 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	WDR90	Q96KV7	1748 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	IFT172	Q9UG01	1749 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	COL5A2	P05997	1499 aa	Predicted RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	CRB1	P82279	1406 aa		3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	YTHDC2	Q9H6S0	1430 aa	Known RBP	3.52	□□□□□ -1.85
PTCH1-223	ENST00000551623	EIF3A	Q14152	1382 aa	Known RBP	3.51	□□□□□ -1.85
PTCH1-223	ENST00000551623	ANKRD30B	Q9BXX2	1392 aa		3.51	□□□□□ -1.85
PTCH1-223	ENST00000551623	SBF2	Q86WG5	1849 aa		3.51	□□□□□ -1.85
PTCH1-223	ENST00000551623	ARHGEF28	Q8N1W1	1705 aa	Known RBP	3.51	□□□□□ -1.85
PTCH1-223	ENST00000551623	ATF2	P15336	505 aa		3.51	□□□□□ -1.85
PTCH1-223	ENST00000551623	KLF10	Q13118	480 aa		3.51	□□□□□ -1.85
PTCH1-223	ENST00000551623	NR1I3	Q14994	352 aa		3.51	□□□□□ -1.85
PTCH1-223	ENST00000551623	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	3.51	□□□□□ -1.85

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