RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 ZNF34Q8IZ26 560 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 CCDC191Q8NCU4 936 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 ISCA1Q9BUE6 129 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 FOXQ1Q9C009 403 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 CHMP4BQ9H444 224 aaKnown RBP7.2□□□□□ -1.26
SCAF11-213ENST00000550629 GTF2IRD1Q9UHL9 959 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 HDAC5Q9UQL6 1122 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 TACC3Q9Y6A5 838 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 ARFGEF2Q9Y6D5 1785 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 TUBGCP6Q96RT7 1819 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 CARMIL3Q8ND23 1372 aa7.2□□□□□ -1.26
SCAF11-213ENST00000550629 N4BP2Q86UW6 1770 aaPredicted RBP7.19□□□□□ -1.26
SCAF11-213ENST00000550629 CASZ1Q86V15 1759 aa7.19□□□□□ -1.26
SCAF11-213ENST00000550629 IGF2BP3O00425 579 aaKnown RBP eCLIP7.19□□□□□ -1.26
SCAF11-213ENST00000550629 PF4P02776 101 aa7.19□□□□□ -1.26
SCAF11-213ENST00000550629 IGKV5-2P06315 115 aa7.19□□□□□ -1.26
SCAF11-213ENST00000550629 HSP90B1P14625 803 aaKnown RBP7.19□□□□□ -1.26
SCAF11-213ENST00000550629 TM4SF1P30408 202 aa7.19□□□□□ -1.26
SCAF11-213ENST00000550629 RPL6Q02878 288 aaKnown RBP7.19□□□□□ -1.26
SCAF11-213ENST00000550629 CAMK2GQ13555 558 aaPredicted RBP7.19□□□□□ -1.26
SCAF11-213ENST00000550629 R3HDM1Q15032 1099 aaKnown RBP7.19□□□□□ -1.26
SCAF11-213ENST00000550629 HLFQ16534 295 aa7.19□□□□□ -1.26
SCAF11-213ENST00000550629 BNC2Q6ZN30 1099 aaPredicted RBP7.19□□□□□ -1.26
SCAF11-213ENST00000550629 NLRP10Q86W26 655 aa7.19□□□□□ -1.26
SCAF11-213ENST00000550629 RSRP1Q9BUV0 290 aa7.19□□□□□ -1.26
SCAF11-213ENST00000550629 MTFR1LQ9H019 292 aa7.19□□□□□ -1.26
SCAF11-213ENST00000550629 CWC25Q9NXE8 425 aaPredicted RBP7.19□□□□□ -1.26
SCAF11-213ENST00000550629 SRP68Q9UHB9 627 aaKnown RBP7.19□□□□□ -1.26
SCAF11-213ENST00000550629 PGRP06401 933 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 GBP2P32456 591 aaPredicted RBP7.18□□□□□ -1.26
SCAF11-213ENST00000550629 CD96P40200 585 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 LMNB2Q03252 620 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 PRKCQQ04759 706 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 GCKRQ14397 625 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 NFIXQ14938 502 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 ZNF648Q5T619 568 aaPredicted RBP7.18□□□□□ -1.26
SCAF11-213ENST00000550629 TBC1D9BQ66K14 1250 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 SLC4A10Q6U841 1118 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 SMIM5Q71RC9 77 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 PPP1R42Q7Z4L9 355 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 CCDC84Q86UT8 332 aaPredicted RBP7.18□□□□□ -1.26
SCAF11-213ENST00000550629 RELL1Q8IUW5 271 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 HOMEZQ8IX15 550 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 MFSD2AQ8NA29 543 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 RIN3Q8TB24 985 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 RHOVQ96L33 236 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 TMEM74Q96NL1 305 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 MIPEPQ99797 713 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 MYD88Q99836 296 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 NYXQ9GZU5 481 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 TNKS2Q9H2K2 1166 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 TJP2Q9UDY2 1190 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 VAV3Q9UKW4 847 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 DDX19BQ9UMR2 479 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 NIP7Q9Y221 180 aaKnown RBP eCLIP7.18□□□□□ -1.26
SCAF11-213ENST00000550629 SUPT16HQ9Y5B9 1047 aaKnown RBP7.18□□□□□ -1.26
SCAF11-213ENST00000550629 UTYO14607 1347 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 COL24A1Q17RW2 1714 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 ANKRD36CQ5JPF3 1778 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 RIC1Q4ADV7 1423 aa7.18□□□□□ -1.26
SCAF11-213ENST00000550629 TMEM265A0A087WTH1 108 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 FAM221AA4D161 298 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 GRM8O00222 908 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 PLIN1O60240 522 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 CILPO75339 1184 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 F13A1P00488 732 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 CST3P01034 146 aaPredicted RBP7.17□□□□□ -1.26
SCAF11-213ENST00000550629 PCCAP05165 728 aaPredicted RBP7.17□□□□□ -1.26
SCAF11-213ENST00000550629 GNAI3P08754 354 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 MMP10P09238 476 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 CD8BP10966 210 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 MRPL58Q14197 206 aaKnown RBP7.17□□□□□ -1.26
SCAF11-213ENST00000550629 MVPQ14764 893 aaKnown RBP7.17□□□□□ -1.26
SCAF11-213ENST00000550629 AOC3Q16853 763 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 PRAMEF13Q5VWM6 474 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 NBPF5PQ86XG9 351 aaPredicted RBP7.17□□□□□ -1.26
SCAF11-213ENST00000550629 TMEM57Q8N5G2 664 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 ZBTB38Q8NAP3 1195 aaPredicted RBP7.17□□□□□ -1.26
SCAF11-213ENST00000550629 PANK1Q8TE04 598 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 HRASLS5Q96KN8 279 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 UTP14AQ9BVJ6 771 aaKnown RBP7.17□□□□□ -1.26
SCAF11-213ENST00000550629 RC3H2Q9HBD1 1191 aaKnown RBP7.17□□□□□ -1.26
SCAF11-213ENST00000550629 PRDM5Q9NQX1 630 aaPredicted RBP7.17□□□□□ -1.26
SCAF11-213ENST00000550629 UBN2Q6ZU65 1347 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 CDHR2Q9BYE9 1310 aa7.17□□□□□ -1.26
SCAF11-213ENST00000550629 NUP98P52948 1817 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 MINDY4BA8MYZ0 360 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 RBAK-RBAKDNI3L0D1 243 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 POLRMTO00411 1230 aaKnown RBP7.16□□□□□ -1.26
SCAF11-213ENST00000550629 NTSR2O95665 410 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 GPTP24298 496 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 POLD1P28340 1107 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 FAM160A1Q05DH4 1040 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 DDR1Q08345 913 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 PKN1Q16512 942 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 NKPD1Q17RQ9 610 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 CWF19L2Q2TBE0 894 aaKnown RBP7.16□□□□□ -1.26
SCAF11-213ENST00000550629 SLC10A5Q5PT55 438 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 SUSD4Q5VX71 490 aa7.16□□□□□ -1.26
SCAF11-213ENST00000550629 LETMD1Q6P1Q0 360 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms