RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 CHMP4BP1P59074 171 aa16.97■□□□□ 0.31
LINC00661-203ENST00000549131 ADCK5Q3MIX3 580 aa16.97■□□□□ 0.31
LINC00661-203ENST00000549131 SYNE3Q6ZMZ3 975 aa16.97■□□□□ 0.31
LINC00661-203ENST00000549131 SGMS1Q86VZ5 419 aa16.97■□□□□ 0.31
LINC00661-203ENST00000549131 SRBD1Q8N5C6 995 aaKnown RBP16.97■□□□□ 0.31
LINC00661-203ENST00000549131 TRPV6Q9H1D0 765 aa16.97■□□□□ 0.31
LINC00661-203ENST00000549131 KPNA6O60684 536 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 MMP3P08254 477 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 SMARCA1P28370 1054 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 CYP2C18P33260 490 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 ARHGAP1Q07960 439 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 MFSD5Q6N075 450 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 GPR153Q6NV75 609 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 APOA5Q6Q788 366 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 TMTC3Q6ZXV5 915 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 Q7L0L9 218 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 DHX32Q7L7V1 743 aaKnown RBP16.96■□□□□ 0.31
LINC00661-203ENST00000549131 CCDC82Q8N4S0 544 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 TMEM199Q8N511 208 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 DEFB123Q8N688 67 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 SMARCC2Q8TAQ2 1214 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 AFG1LQ8WV93 481 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 CUL5Q93034 780 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 ALDH8A1Q9H2A2 487 aaPredicted RBP16.96■□□□□ 0.31
LINC00661-203ENST00000549131 HIPK3Q9H422 1215 aa16.96■□□□□ 0.31
LINC00661-203ENST00000549131 TRIP12Q14669 1992 aaPredicted RBP16.96■□□□□ 0.31
LINC00661-203ENST00000549131 hCG_1642624A0A1W2PR95 340 aa16.95■□□□□ 0.3
LINC00661-203ENST00000549131 SORBS3O60504 671 aa16.95■□□□□ 0.3
LINC00661-203ENST00000549131 FGD1P98174 961 aa16.95■□□□□ 0.3
LINC00661-203ENST00000549131 PPIGQ13427 754 aaKnown RBP eCLIP16.95■□□□□ 0.3
LINC00661-203ENST00000549131 TSGA10IPQ3SY00 556 aa16.95■□□□□ 0.3
LINC00661-203ENST00000549131 FANCBQ8NB91 859 aa16.95■□□□□ 0.3
LINC00661-203ENST00000549131 PPP1R13LQ8WUF5 828 aa16.95■□□□□ 0.3
LINC00661-203ENST00000549131 ZFP91Q96JP5 570 aaPredicted RBP16.95■□□□□ 0.3
LINC00661-203ENST00000549131 TRMT13Q9NUP7 481 aaKnown RBP16.95■□□□□ 0.3
LINC00661-203ENST00000549131 DDX41Q9UJV9 622 aaKnown RBP16.95■□□□□ 0.3
LINC00661-203ENST00000549131 FRMPD4Q14CM0 1322 aa16.95■□□□□ 0.3
LINC00661-203ENST00000549131 UMODL1Q5DID0 1318 aa16.95■□□□□ 0.3
LINC00661-203ENST00000549131 ZBTB43O43298 467 aa16.94■□□□□ 0.3
LINC00661-203ENST00000549131 RGS20O76081 388 aa16.94■□□□□ 0.3
LINC00661-203ENST00000549131 REC8O95072 547 aa16.94■□□□□ 0.3
LINC00661-203ENST00000549131 HMGB1P09429 215 aaKnown RBP16.94■□□□□ 0.3
LINC00661-203ENST00000549131 CSF2RAP15509 400 aa16.94■□□□□ 0.3
LINC00661-203ENST00000549131 EXOSC10Q01780 885 aaKnown RBP16.94■□□□□ 0.3
LINC00661-203ENST00000549131 RTN1Q16799 776 aa16.94■□□□□ 0.3
LINC00661-203ENST00000549131 NBPF20Q3BBV1 942 aa16.94■□□□□ 0.3
LINC00661-203ENST00000549131 VSIG10LQ86VR7 867 aa16.94■□□□□ 0.3
LINC00661-203ENST00000549131 JAKMIP1Q96N16 626 aaKnown RBP16.94■□□□□ 0.3
LINC00661-203ENST00000549131 NOC4LQ9BVI4 516 aaKnown RBP16.94■□□□□ 0.3
LINC00661-203ENST00000549131 RBM28Q9NW13 759 aaKnown RBP16.94■□□□□ 0.3
LINC00661-203ENST00000549131 NAP1L2Q9ULW6 460 aaPredicted RBP16.94■□□□□ 0.3
LINC00661-203ENST00000549131 CNTNAP5Q8WYK1 1306 aa16.94■□□□□ 0.3
LINC00661-203ENST00000549131 KLF18A0A0U1RQI7 1052 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 GOLGA8AA7E2F4 631 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 GOLGA8BA8MQT2 603 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 CPA1P15085 419 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 UBA1P22314 1058 aaKnown RBP16.93■□□□□ 0.3
LINC00661-203ENST00000549131 HSPA4P34932 840 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 NFRKBQ6P4R8 1299 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 KCNV1Q6PIU1 500 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 USP17L6PQ6QN14 398 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 HEATR3Q7Z4Q2 680 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 DHX37Q8IY37 1157 aaKnown RBP16.93■□□□□ 0.3
LINC00661-203ENST00000549131 GPKOWQ92917 476 aaPredicted RBP eCLIP16.93■□□□□ 0.3
LINC00661-203ENST00000549131 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.93■□□□□ 0.3
LINC00661-203ENST00000549131 BRPF3Q9ULD4 1205 aa16.93■□□□□ 0.3
LINC00661-203ENST00000549131 GGPS1O95749 300 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 SUPT20HL2P0C7V6 817 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 ZNF286BP0CG31 522 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 ACRP10323 421 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 CYP2C9P11712 490 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 CASTP20810 708 aaKnown RBP16.92■□□□□ 0.3
LINC00661-203ENST00000549131 CCL23P55773 120 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 LAMC2Q13753 1193 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 DGKDQ16760 1214 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 GNPTABQ3T906 1256 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 PSRC1Q6PGN9 363 aaPredicted RBP16.92■□□□□ 0.3
LINC00661-203ENST00000549131 PPTC7Q8NI37 304 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 EMID1Q96A84 441 aaPredicted RBP16.92■□□□□ 0.3
LINC00661-203ENST00000549131 NOD1Q9Y239 953 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 SNX14Q9Y5W7 946 aa16.92■□□□□ 0.3
LINC00661-203ENST00000549131 PIK3CDO00329 1044 aa16.91■□□□□ 0.3
LINC00661-203ENST00000549131 MEIS2O14770 477 aa16.91■□□□□ 0.3
LINC00661-203ENST00000549131 ZNF697Q5TEC3 545 aa16.91■□□□□ 0.3
LINC00661-203ENST00000549131 BLOC1S2Q6QNY1 142 aa16.91■□□□□ 0.3
LINC00661-203ENST00000549131 SPATA33Q96N06 139 aa16.91■□□□□ 0.3
LINC00661-203ENST00000549131 WNT8AQ9H1J5 351 aa16.91■□□□□ 0.3
LINC00661-203ENST00000549131 PSTPIP2Q9H939 334 aa16.91■□□□□ 0.3
LINC00661-203ENST00000549131 STAM2O75886 525 aa16.9■□□□□ 0.3
LINC00661-203ENST00000549131 MRPS9P82933 396 aaKnown RBP16.9■□□□□ 0.3
LINC00661-203ENST00000549131 SMAD3P84022 425 aaKnown RBP16.9■□□□□ 0.3
LINC00661-203ENST00000549131 PTPN11Q06124 597 aaPredicted RBP16.9■□□□□ 0.3
LINC00661-203ENST00000549131 UBE2SQ16763 222 aa16.9■□□□□ 0.3
LINC00661-203ENST00000549131 CELF3Q5SZQ8 465 aaKnown RBP16.9■□□□□ 0.3
LINC00661-203ENST00000549131 MYSM1Q5VVJ2 828 aa16.9■□□□□ 0.3
LINC00661-203ENST00000549131 KAT2BQ92831 832 aa16.9■□□□□ 0.3
LINC00661-203ENST00000549131 SCLYQ96I15 445 aa16.9■□□□□ 0.3
LINC00661-203ENST00000549131 FAM161BQ96MY7 647 aa16.9■□□□□ 0.3
LINC00661-203ENST00000549131 IL23AQ9NPF7 189 aa16.9■□□□□ 0.3
LINC00661-203ENST00000549131 PPP4R2Q9NY27 417 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms