RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 PALD1Q9ULE6 856 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 FLT1P17948 1338 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 PARP14Q460N5 1801 aa7.96□□□□□ -1.13
LIMA1-204ENST00000549064 MEN1O00255 615 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 ADAMTS4O75173 837 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 CIAO1O76071 339 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 MAP4K4O95819 1239 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-204ENST00000549064 MZF1P28698 734 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-204ENST00000549064 ACLYP53396 1101 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 GSTO1P78417 241 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 CENPCQ03188 943 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 RAD51AP2Q09MP3 1159 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 CLN3Q13286 438 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 RTN1Q16799 776 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 C11orf91Q3C1V1 193 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 CCDC184Q52MB2 194 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 PSRC1Q6PGN9 363 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-204ENST00000549064 METTL16Q86W50 562 aaKnown RBP7.96□□□□□ -1.14
LIMA1-204ENST00000549064 NT5DC4Q86YG4 428 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 FOXP4Q8IVH2 680 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-204ENST00000549064 ZNF295-AS1Q8N0V1 137 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 PIK3R5Q8WYR1 880 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 IFT43Q96FT9 208 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 MAML3Q96JK9 1138 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 AGBL1Q96MI9 1066 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 TOX2Q96NM4 488 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-204ENST00000549064 USP34Q70CQ2 3546 aa7.96□□□□□ -1.14
LIMA1-204ENST00000549064 COL4A4P53420 1690 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-204ENST00000549064 BRWD1Q9NSI6 2320 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 A0A1B0GUL7 405 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 MYADML2A6NDP7 307 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 PI4K2BG5E9Z4 385 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 WNT7AO00755 349 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 STRNO43815 780 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 CYP2C18P33260 490 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 IL15P40933 162 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-204ENST00000549064 NHLH1Q02575 133 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 NNTQ13423 1086 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 RAB3GAP1Q15042 981 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 CCDC174Q6PII3 467 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 OTOP2Q7RTS6 562 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 ADGRA1Q86SQ6 560 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 TMEM199Q8N511 208 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 HERVK_113Q902F9 699 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 SPATC1LQ9H0A9 340 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 KIAA1683Q9H0B3 1180 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 CERS4Q9HA82 394 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 GINM1Q9NU53 330 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 MTCH2Q9Y6C9 303 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 UMODL1Q5DID0 1318 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 SYNRGQ9UMZ2 1314 aa7.95□□□□□ -1.14
LIMA1-204ENST00000549064 MCM3APO60318 1980 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 EPOPA6NHQ4 379 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 PGK2P07205 417 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 ZNF865P0CJ78 1059 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-204ENST00000549064 USP14P54578 494 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 FANCCQ00597 558 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 ORC1Q13415 861 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 PLS1Q14651 629 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 SF3A1Q15459 793 aaKnown RBP7.94□□□□□ -1.14
LIMA1-204ENST00000549064 KCNA10Q16322 511 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 NCAPG2Q86XI2 1143 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 FAM177A1Q8N128 213 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-204ENST00000549064 SPATA5Q8NB90 893 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 SHCBP1Q8NEM2 672 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 GPR152Q8TDT2 470 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 UIMC1Q96RL1 719 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 IL23AQ9NPF7 189 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 ZNF521Q96K83 1311 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 TRANK1O15050 2925 aa7.94□□□□□ -1.14
LIMA1-204ENST00000549064 A6NHS1 94 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 PRR33A8MZF0 331 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 FGBP02675 491 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 HLA-DOAP06340 250 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 AKR1A1P14550 325 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 PTGIRP43119 386 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 MCAMP43121 646 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 USP5P45974 858 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 CDK7P50613 346 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 DYNLL1P63167 89 aaKnown RBP7.93□□□□□ -1.14
LIMA1-204ENST00000549064 RELBQ01201 579 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 TFCP2Q12800 502 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 KIAA1755Q5JYT7 1200 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 ALG1LQ6GMV1 187 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 CCSAPQ6IQ19 270 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-204ENST00000549064 WDR63Q8IWG1 891 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 FAM126BQ8IXS8 530 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 KLHDC9Q8NEP7 349 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 NUP133Q8WUM0 1156 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 UBXN4Q92575 508 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 ANKS1AQ92625 1134 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 RNF34Q969K3 372 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 FBXL18Q96ME1 805 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 NEUROD6Q96NK8 337 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 NOL10Q9BSC4 688 aaKnown RBP7.93□□□□□ -1.14
LIMA1-204ENST00000549064 TINF2Q9BSI4 451 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 TSEN34Q9BSV6 310 aaKnown RBP7.93□□□□□ -1.14
LIMA1-204ENST00000549064 TANGO6Q9C0B7 1094 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 SLC5A4Q9NY91 659 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms