RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 EMID1Q96A84 441 aaPredicted RBP13.18□□□□□ -0.3
YBX3-216ENST00000544622 TRIM43Q96BQ3 446 aaPredicted RBP13.18□□□□□ -0.3
YBX3-216ENST00000544622 PDLIM7Q9NR12 457 aa13.18□□□□□ -0.3
YBX3-216ENST00000544622 V9GY48 417 aaPredicted RBP13.18□□□□□ -0.3
YBX3-216ENST00000544622 TRIOBPQ9H2D6 2365 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 GOLGA8AA7E2F4 631 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 GOLGA8BA8MQT2 603 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 ZEB2O60315 1214 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 CD4P01730 458 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 PDIA3P30101 505 aaKnown RBP13.17□□□□□ -0.3
YBX3-216ENST00000544622 CPT1AP50416 773 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 METAP2P50579 478 aaKnown RBP eCLIP13.17□□□□□ -0.3
YBX3-216ENST00000544622 PURAQ00577 322 aaKnown RBP13.17□□□□□ -0.3
YBX3-216ENST00000544622 WWC2Q6AWC2 1192 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 SEPT14Q6ZU15 432 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 FCHSD1Q86WN1 690 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 TEX2Q8IWB9 1127 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 FAM126BQ8IXS8 530 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 SEZ6LQ9BYH1 1024 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 PSTPIP2Q9H939 334 aa13.17□□□□□ -0.3
YBX3-216ENST00000544622 A0A0U1RQG5 324 aaPredicted RBP13.16□□□□□ -0.3
YBX3-216ENST00000544622 CCDC196A0A1B0GTZ2 297 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 KIAA0355O15063 1070 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 STAM2O75886 525 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 SEC24BO95487 1268 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 CLTBP09497 229 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 TGFB3P10600 412 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 ANAPC15P60006 121 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 FGD1P98174 961 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 SP2Q02086 613 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 ARHGAP1Q07960 439 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 OR6J1Q8NGC5 347 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 INPP4AQ96PE3 977 aaPredicted RBP13.16□□□□□ -0.3
YBX3-216ENST00000544622 CYP46A1Q9Y6A2 500 aa13.16□□□□□ -0.3
YBX3-216ENST00000544622 MROH7Q68CQ1 1323 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 hCG_1984214I3L0E3 225 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 PQBP1O60828 265 aaKnown RBP13.15□□□□□ -0.3
YBX3-216ENST00000544622 GH1P01241 217 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 MYCLP12524 364 aaPredicted RBP13.15□□□□□ -0.3
YBX3-216ENST00000544622 HOXD8P13378 290 aaPredicted RBP13.15□□□□□ -0.3
YBX3-216ENST00000544622 CCND2P30279 289 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 ICAM3P32942 547 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 FXR1P51114 621 aaKnown RBP eCLIP13.15□□□□□ -0.3
YBX3-216ENST00000544622 ITGA7Q13683 1181 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 PKN1Q16512 942 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 PFKFB3Q16875 520 aaPredicted RBP13.15□□□□□ -0.3
YBX3-216ENST00000544622 MYSM1Q5VVJ2 828 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 PCNX4Q63HM2 1172 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 KCNV1Q6PIU1 500 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 ZNF713Q8N859 430 aaPredicted RBP13.15□□□□□ -0.3
YBX3-216ENST00000544622 SMARCC2Q8TAQ2 1214 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 GPKOWQ92917 476 aaPredicted RBP eCLIP13.15□□□□□ -0.3
YBX3-216ENST00000544622 ZNF274Q96GC6 653 aaPredicted RBP13.15□□□□□ -0.3
YBX3-216ENST00000544622 UPF3BQ9BZI7 483 aaKnown RBP13.15□□□□□ -0.3
YBX3-216ENST00000544622 ALDH8A1Q9H2A2 487 aaPredicted RBP13.15□□□□□ -0.3
YBX3-216ENST00000544622 POLR3EQ9NVU0 708 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 BARHL2Q9NY43 387 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 TBX21Q9UL17 535 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 KIAA1217Q5T5P2 1943 aa13.15□□□□□ -0.3
YBX3-216ENST00000544622 CDH23Q9H251 3354 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 DCDC2CA8MYV0 355 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 SPATA31C2B4DYI2 1134 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 STXBP3O00186 592 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 PRPF3O43395 683 aaKnown RBP13.14□□□□□ -0.31
YBX3-216ENST00000544622 KPNA6O60684 536 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 IFNAR1P17181 557 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 CLK2P49760 499 aaKnown RBP13.14□□□□□ -0.31
YBX3-216ENST00000544622 PSMC6P62333 389 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 MDM2Q00987 491 aaPredicted RBP13.14□□□□□ -0.31
YBX3-216ENST00000544622 SEMA3FQ13275 785 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 PPP1R18Q6NYC8 613 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 XRRA1Q6P2D8 792 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 HEATR3Q7Z4Q2 680 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 AFG1LQ8WV93 481 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 CUL5Q93034 780 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 ZFP91Q96JP5 570 aaPredicted RBP13.14□□□□□ -0.31
YBX3-216ENST00000544622 RIC8AQ9NPQ8 531 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 PRKAG2Q9UGJ0 569 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 MRVI1Q9Y6F6 885 aa13.14□□□□□ -0.31
YBX3-216ENST00000544622 LTBP2Q14767 1821 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 MMP3P08254 477 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 LAMC2Q13753 1193 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 UBE2SQ16763 222 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 BRDTQ58F21 947 aaPredicted RBP13.13□□□□□ -0.31
YBX3-216ENST00000544622 CELF3Q5SZQ8 465 aaKnown RBP13.13□□□□□ -0.31
YBX3-216ENST00000544622 PPTC7Q8NI37 304 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 KAT2BQ92831 832 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 BADQ92934 168 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 VTI1AQ96AJ9 217 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 MTG1Q9BT17 334 aaPredicted RBP13.13□□□□□ -0.31
YBX3-216ENST00000544622 BCAS3Q9H6U6 928 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 TMEM39AQ9NV64 488 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 PCDHA6Q9UN73 950 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 PCDHA8Q9Y5H6 950 aa13.13□□□□□ -0.31
YBX3-216ENST00000544622 SMCO2A6NFE2 343 aa13.12□□□□□ -0.31
YBX3-216ENST00000544622 EIF5BO60841 1220 aaKnown RBP13.12□□□□□ -0.31
YBX3-216ENST00000544622 PPFIA4O75335 1185 aa13.12□□□□□ -0.31
YBX3-216ENST00000544622 TIMP1P01033 207 aa13.12□□□□□ -0.31
YBX3-216ENST00000544622 SCG2P13521 617 aa13.12□□□□□ -0.31
YBX3-216ENST00000544622 ITGB5P18084 799 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms