RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 GLT8D2Q9H1C3 349 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 PCDHA12Q9UN75 941 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 MARCH6O60337 910 aa20.08■□□□□ 0.81
VIM-209ENST00000544301 IDEP14735 1019 aa20.08■□□□□ 0.81
VIM-209ENST00000544301 TATDN1Q6P1N9 297 aa20.08■□□□□ 0.81
VIM-209ENST00000544301 SIAH1Q8IUQ4 282 aa20.08■□□□□ 0.81
VIM-209ENST00000544301 PCDHA1Q9Y5I3 950 aa20.08■□□□□ 0.81
VIM-209ENST00000544301 SCN9AQ15858 1988 aa20.08■□□□□ 0.8
VIM-209ENST00000544301 ZBED6P86452 979 aa20.08■□□□□ 0.8
VIM-209ENST00000544301 PSMD2Q13200 908 aa20.08■□□□□ 0.8
VIM-209ENST00000544301 ZMYND15Q9H091 742 aa20.08■□□□□ 0.8
VIM-209ENST00000544301 ARFGEF1Q9Y6D6 1849 aa20.07■□□□□ 0.8
VIM-209ENST00000544301 HOXA7P31268 230 aaPredicted RBP20.07■□□□□ 0.8
VIM-209ENST00000544301 CHMP4BP1P59074 171 aa20.07■□□□□ 0.8
VIM-209ENST00000544301 HERVK_113P62684 666 aa20.07■□□□□ 0.8
VIM-209ENST00000544301 SEPT2Q15019 361 aa20.07■□□□□ 0.8
VIM-209ENST00000544301 CDC37Q16543 378 aaPredicted RBP20.07■□□□□ 0.8
VIM-209ENST00000544301 FIGNQ5HY92 759 aa20.07■□□□□ 0.8
VIM-209ENST00000544301 HYIQ5T013 277 aa20.07■□□□□ 0.8
VIM-209ENST00000544301 FKBP15Q5T1M5 1219 aa20.07■□□□□ 0.8
VIM-209ENST00000544301 STYK1Q6J9G0 422 aa20.07■□□□□ 0.8
VIM-209ENST00000544301 CEP112Q8N8E3 955 aa20.07■□□□□ 0.8
VIM-209ENST00000544301 PCMTD1Q96MG8 357 aaPredicted RBP20.07■□□□□ 0.8
VIM-209ENST00000544301 A0A1W2PQJ5 194 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 NPM3O75607 178 aaKnown RBP20.06■□□□□ 0.8
VIM-209ENST00000544301 PNMA6AP0CW24 399 aaPredicted RBP20.06■□□□□ 0.8
VIM-209ENST00000544301 DMTNQ08495 405 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 DNAJC19Q96DA6 116 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 TRIM34Q9BYJ4 488 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 ZSWIM4Q9H7M6 989 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 ZNHIT6Q9NWK9 470 aaKnown RBP20.06■□□□□ 0.8
VIM-209ENST00000544301 TRIM10Q9UDY6 481 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 PUF60Q9UHX1 559 aaKnown RBP20.06■□□□□ 0.8
VIM-209ENST00000544301 SERPINA10Q9UK55 444 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 ZNF646O15015 1829 aaPredicted RBP20.06■□□□□ 0.8
VIM-209ENST00000544301 H0YIN7 160 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 USP11P51784 963 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 LRRC63Q05C16 580 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 VWA3BQ502W6 1294 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 GLIS3Q8NEA6 775 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 PARD6BQ9BYG5 372 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 HAUS4Q9H6D7 363 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 GUCA1BQ9UMX6 200 aa20.06■□□□□ 0.8
VIM-209ENST00000544301 FGFR1OPO95684 399 aaKnown RBP20.05■□□□□ 0.8
VIM-209ENST00000544301 ICA1Q05084 483 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 TMEM179Q6ZVK1 233 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 ANO3Q9BYT9 981 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 KCNMB3Q9NPA1 279 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 ZNF219Q9P2Y4 722 aaPredicted RBP20.05■□□□□ 0.8
VIM-209ENST00000544301 KDM3AQ9Y4C1 1321 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 SLX4Q8IY92 1834 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 CYP3A7-CYP3A51PA0A087WV96 503 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 SEC31AO94979 1220 aaKnown RBP20.05■□□□□ 0.8
VIM-209ENST00000544301 CYP3A7P24462 503 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 KRT83P78385 493 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 LRRC41Q15345 812 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 NT5C3AQ9H0P0 336 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 NDST4Q9H3R1 872 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 NHEJ1Q9H9Q4 299 aaPredicted RBP20.05■□□□□ 0.8
VIM-209ENST00000544301 ABCB11O95342 1321 aa20.05■□□□□ 0.8
VIM-209ENST00000544301 F5H6K3 240 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 MEIS2O14770 477 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 CYLC1P35663 651 aaPredicted RBP20.04■□□□□ 0.8
VIM-209ENST00000544301 KLRC3Q07444 240 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 COASYQ13057 564 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 ZNF662Q6ZS27 426 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 LRRC55Q6ZSA7 311 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 CCDC170Q8IYT3 715 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 IQCDQ96DY2 449 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 MBOAT7Q96N66 472 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 UIMC1Q96RL1 719 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 SIK3Q9Y2K2 1263 aa20.04■□□□□ 0.8
VIM-209ENST00000544301 GDF11O95390 407 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 CDK17Q00537 523 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 AMPD2Q01433 879 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 GABPB1Q06547 395 aaPredicted RBP20.03■□□□□ 0.8
VIM-209ENST00000544301 MAN2A1Q16706 1144 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 ABCB5Q2M3G0 1257 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 UTP14CQ5TAP6 766 aaKnown RBP20.03■□□□□ 0.8
VIM-209ENST00000544301 CC2D1AQ6P1N0 951 aaPredicted RBP20.03■□□□□ 0.8
VIM-209ENST00000544301 FOXR2Q6PJQ5 311 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 GMCL1P1Q8NEA9 526 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 EIF3CLB5ME19 914 aaKnown RBP20.03■□□□□ 0.8
VIM-209ENST00000544301 WHAMMP3Q1A5X7 153 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 MYOCDQ8IZQ8 938 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 EIF3CQ99613 913 aaKnown RBP20.03■□□□□ 0.8
VIM-209ENST00000544301 PANK4Q9NVE7 773 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 TFR2Q9UP52 801 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 KIAA1024Q9UPX6 916 aa20.03■□□□□ 0.8
VIM-209ENST00000544301 E9PMD0 336 aa20.02■□□□□ 0.8
VIM-209ENST00000544301 PSMD14O00487 310 aa20.02■□□□□ 0.8
VIM-209ENST00000544301 TFRCP02786 760 aaKnown RBP20.02■□□□□ 0.8
VIM-209ENST00000544301 SNAP25P60880 206 aa20.02■□□□□ 0.8
VIM-209ENST00000544301 AP3B2Q13367 1082 aa20.02■□□□□ 0.8
VIM-209ENST00000544301 AOC3Q16853 763 aa20.02■□□□□ 0.8
VIM-209ENST00000544301 CCDC122Q5T0U0 273 aa20.02■□□□□ 0.8
VIM-209ENST00000544301 CRYGNQ8WXF5 182 aa20.02■□□□□ 0.8
VIM-209ENST00000544301 GMCL1Q96IK5 515 aa20.02■□□□□ 0.8
VIM-209ENST00000544301 P2RX7Q99572 595 aaKnown RBP20.02■□□□□ 0.8
VIM-209ENST00000544301 TSG101Q99816 390 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms