RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 TNNI2P48788 182 aa11□□□□□ -0.65
SS18-205ENST00000542420 KRT83P78385 493 aa11□□□□□ -0.65
SS18-205ENST00000542420 SH3BP5LQ7L8J4 393 aa11□□□□□ -0.65
SS18-205ENST00000542420 CCDC84Q86UT8 332 aaPredicted RBP11□□□□□ -0.65
SS18-205ENST00000542420 RTKN2Q8IZC4 609 aa11□□□□□ -0.65
SS18-205ENST00000542420 CEP112Q8N8E3 955 aa11□□□□□ -0.65
SS18-205ENST00000542420 KIAA0895Q8NCT3 520 aa11□□□□□ -0.65
SS18-205ENST00000542420 ERMNQ8TAM6 284 aa11□□□□□ -0.65
SS18-205ENST00000542420 HAS1Q92839 578 aa11□□□□□ -0.65
SS18-205ENST00000542420 CEP63Q96MT8 703 aa11□□□□□ -0.65
SS18-205ENST00000542420 TMOD2Q9NZR1 351 aa11□□□□□ -0.65
SS18-205ENST00000542420 PCDHA12Q9UN75 941 aa11□□□□□ -0.65
SS18-205ENST00000542420 DDTLA6NHG4 134 aaPredicted RBP10.99□□□□□ -0.65
SS18-205ENST00000542420 CYLC1P35663 651 aaPredicted RBP10.99□□□□□ -0.65
SS18-205ENST00000542420 SREBF1P36956 1147 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 PMS1P54277 932 aaKnown RBP10.99□□□□□ -0.65
SS18-205ENST00000542420 MARSP56192 900 aaKnown RBP10.99□□□□□ -0.65
SS18-205ENST00000542420 GOLGA8FQ08AF8 430 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 GOLGA8DPQ0D2H9 430 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 STK4Q13043 487 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 SLC15A2Q16348 729 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 MAN2A1Q16706 1144 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 RBM26Q5T8P6 1007 aaKnown RBP10.99□□□□□ -0.65
SS18-205ENST00000542420 SYDE2Q5VT97 1194 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 TTBK2Q6IQ55 1244 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 ZC3H3Q8IXZ2 948 aaKnown RBP10.99□□□□□ -0.65
SS18-205ENST00000542420 TXLNBQ8N3L3 684 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 GPR161Q8N6U8 529 aaKnown RBP10.99□□□□□ -0.65
SS18-205ENST00000542420 UBXN4Q92575 508 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 GINM1Q9NU53 330 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 FAM53CQ9NYF3 392 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 DDX41Q9UJV9 622 aaKnown RBP10.99□□□□□ -0.65
SS18-205ENST00000542420 PCDHA1Q9Y5I3 950 aa10.99□□□□□ -0.65
SS18-205ENST00000542420 FRMD3A2A2Y4 597 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 TRIM49BA6NDI0 452 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 URI1O94763 535 aaPredicted RBP10.98□□□□□ -0.65
SS18-205ENST00000542420 RXRBP28702 533 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 ERVK-24P63145 666 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 ANKRD40Q6AI12 368 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 FBXO11Q86XK2 927 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 KIAA0825Q8IV33 1275 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 CCDC65Q8IXS2 484 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 RABGGTAQ92696 567 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 MXD3Q9BW11 206 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 NUCKS1Q9H1E3 243 aaKnown RBP10.98□□□□□ -0.65
SS18-205ENST00000542420 MRPL44Q9H9J2 332 aaKnown RBP10.98□□□□□ -0.65
SS18-205ENST00000542420 ARHGEF10LQ9HCE6 1279 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 STK32BQ9NY57 414 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 HDAC9Q9UKV0 1011 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 F5H6K3 240 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 BMP3P12645 472 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 EIF6P56537 245 aaKnown RBP10.98□□□□□ -0.65
SS18-205ENST00000542420 KLRC3Q07444 240 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 MCM6Q14566 821 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 ARHGAP29Q52LW3 1261 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 KCTD1Q719H9 257 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 RSRC2Q7L4I2 434 aaKnown RBP10.98□□□□□ -0.65
SS18-205ENST00000542420 SIAH1Q8IUQ4 282 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 FAM151AQ8WW52 585 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 DNAJC19Q96DA6 116 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 ZFP91Q96JP5 570 aaPredicted RBP10.98□□□□□ -0.65
SS18-205ENST00000542420 SH2D4AQ9H788 454 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 CDC23Q9UJX2 597 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 RABGAP1Q9Y3P9 1069 aa10.98□□□□□ -0.65
SS18-205ENST00000542420 EPN1Q9Y6I3 576 aaPredicted RBP10.98□□□□□ -0.65
SS18-205ENST00000542420 TTC26A0AVF1 554 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 EIF3CLB5ME19 914 aaKnown RBP10.97□□□□□ -0.65
SS18-205ENST00000542420 TULP2O00295 520 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 MEIS2O14770 477 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 NDUFA10O95299 355 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 MTIF2P46199 727 aaKnown RBP10.97□□□□□ -0.65
SS18-205ENST00000542420 GABPB1Q06547 395 aaPredicted RBP10.97□□□□□ -0.65
SS18-205ENST00000542420 TBC1D8BQ0IIM8 1120 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 ELF2Q15723 593 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 WHAMMP3Q1A5X7 153 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 MIIPQ5JXC2 388 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 CREBRFQ8IUR6 639 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 ZFPM1Q8IX07 1006 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 EIF3CQ99613 913 aaKnown RBP10.97□□□□□ -0.65
SS18-205ENST00000542420 NOC4LQ9BVI4 516 aaKnown RBP10.97□□□□□ -0.65
SS18-205ENST00000542420 TSGA10Q9BZW7 698 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 DEFB129Q9H1M3 183 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 SEMA6BQ9H3T3 888 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 EHMT1Q9H9B1 1298 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 CTAGE9A4FU28 777 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 MARCH6O60337 910 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 NDUFB10O96000 172 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 PPP2R3AQ06190 1150 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 UBE2SQ16763 222 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 VWA3BQ502W6 1294 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 ZCWPW2Q504Y3 356 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 RSBN1LQ6PCB5 846 aaPredicted RBP10.97□□□□□ -0.65
SS18-205ENST00000542420 FAM83AQ86UY5 434 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 MYOCDQ8IZQ8 938 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 SAMD3Q8N6K7 520 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 ETNPPLQ8TBG4 499 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 DDX12PQ92771 950 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 WDR24Q96S15 920 aa10.97□□□□□ -0.65
SS18-205ENST00000542420 FANCGO15287 622 aa10.96□□□□□ -0.65
SS18-205ENST00000542420 VIL1P09327 827 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms