RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 TCEAL5Q5H9L2 206 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 GNASQ5JWF2 1037 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 PI16Q6UXB8 463 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 ZNF384Q8TF68 577 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 STAG1Q8WVM7 1258 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 BRF1Q92994 677 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 C12orf42Q96LP6 360 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 CLDND1Q9NY35 253 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 ARPP21Q9UBL0 812 aaPredicted RBP9.67□□□□□ -0.86
CHD4-208ENST00000540960 ZBTB21Q9ULJ3 1066 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 COL11A1P12107 1806 aaPredicted RBP9.67□□□□□ -0.86
CHD4-208ENST00000540960 FRYLO94915 3013 aa9.67□□□□□ -0.86
CHD4-208ENST00000540960 LINC01553A4QN01 128 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 DUSP11O75319 330 aaKnown RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 LETM1O95202 739 aaPredicted RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 SNAI1O95863 264 aaPredicted RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 CALM1P0DP23 149 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 CALM2P0DP24 149 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 CALM3P0DP25 149 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 ARP10275 920 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 SYT1P21579 422 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 PPP4CP60510 307 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 PDE4BQ07343 736 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 MKRN4PQ13434 485 aaPredicted RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 ZNF792Q3KQV3 632 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 SBK1Q52WX2 424 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 CXCL17Q6UXB2 119 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 IQCA1Q86XH1 822 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 NCAPG2Q86XI2 1143 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 MB21D2Q8IYB1 491 aaPredicted RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 TMEM105Q8N8V8 129 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 PCSK9Q8NBP7 692 aaKnown RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 SHCBP1Q8NEM2 672 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 ACER1Q8TDN7 264 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 NSUN4Q96CB9 384 aaKnown RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 FAM163AQ96GL9 167 aaPredicted RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 TGS1Q96RS0 853 aaKnown RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 C17orf80Q9BSJ5 609 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 UBAC1Q9BSL1 405 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 SCAND2PQ9GZW5 306 aaPredicted RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 RPAP3Q9H6T3 665 aaPredicted RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 HERC5Q9UII4 1024 aaKnown RBP9.66□□□□□ -0.86
CHD4-208ENST00000540960 CFAP45Q9UL16 551 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 FAM184BQ9ULE4 1060 aa9.66□□□□□ -0.86
CHD4-208ENST00000540960 GPR75-ASB3A0A0A6YYF3 556 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 CCDC69A6NI79 296 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 GSG1L2A8MUP6 293 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 CYP2C9P11712 490 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 PTGS1P23219 599 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 MECOMQ03112 1051 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 PPARAQ07869 468 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 ITGA7Q13683 1181 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 PLS1Q14651 629 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 PPP4R3BQ5MIZ7 849 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 MCTP1Q6DN14 999 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 NFXL1Q6ZNB6 911 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 SGMS1Q86VZ5 419 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 ABRAQ8N0Z2 381 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 BANK1Q8NDB2 785 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 MRPL38Q96DV4 380 aaKnown RBP9.65□□□□□ -0.86
CHD4-208ENST00000540960 POP1Q99575 1024 aaKnown RBP9.65□□□□□ -0.86
CHD4-208ENST00000540960 UPF3AQ9H1J1 476 aaKnown RBP9.65□□□□□ -0.86
CHD4-208ENST00000540960 ARMT1Q9H993 441 aa9.65□□□□□ -0.86
CHD4-208ENST00000540960 DDX49Q9Y6V7 483 aaKnown RBP9.65□□□□□ -0.86
CHD4-208ENST00000540960 MROH7-TTC4A0A0A0MT08 1334 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 F13A1P00488 732 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 GH2P01242 217 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 PFKMP08237 780 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 FCER1AP12319 257 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 ACTN1P12814 892 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 PDIA3P30101 505 aaKnown RBP9.64□□□□□ -0.87
CHD4-208ENST00000540960 GJA9P57773 515 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 PSMC6P62333 389 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 KRT85P78386 507 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 DEFB103AP81534 67 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 RSPO4Q2I0M5 234 aaPredicted RBP9.64□□□□□ -0.87
CHD4-208ENST00000540960 STOX1Q6ZVD7 989 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 RPAINQ86UA6 219 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 TMEM87AQ8NBN3 555 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 SMARCC2Q8TAQ2 1214 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 ZNF396Q96N95 335 aaPredicted RBP9.64□□□□□ -0.87
CHD4-208ENST00000540960 FEZ1Q99689 392 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 RIOK1Q9BRS2 568 aaKnown RBP9.64□□□□□ -0.87
CHD4-208ENST00000540960 MROH8Q9H579 483 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 PI4KBQ9UBF8 816 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 ZHX1Q9UKY1 873 aaPredicted RBP9.64□□□□□ -0.87
CHD4-208ENST00000540960 NAP1L2Q9ULW6 460 aaPredicted RBP9.64□□□□□ -0.87
CHD4-208ENST00000540960 CNPY2Q9Y2B0 182 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 SLC12A7Q9Y666 1083 aa9.64□□□□□ -0.87
CHD4-208ENST00000540960 TRIP12Q14669 1992 aaPredicted RBP9.64□□□□□ -0.87
CHD4-208ENST00000540960 GCN1Q92616 2671 aaKnown RBP9.63□□□□□ -0.87
CHD4-208ENST00000540960 KLF18A0A0U1RQI7 1052 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 VPS37CA5D8V6 355 aaPredicted RBP9.63□□□□□ -0.87
CHD4-208ENST00000540960 GOLGA8BA8MQT2 603 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 IFIT3O14879 490 aaKnown RBP9.63□□□□□ -0.87
CHD4-208ENST00000540960 ZBTB43O43298 467 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 ORC4O43929 436 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 FGRP09769 529 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 CPA1P15085 419 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 XBP1P17861 261 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms