RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 DMTNQ08495 405 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 TBC1D10BQ4KMP7 808 aaPredicted RBP18.84■□□□□ 0.61
USP28-208ENST00000540438 MIIPQ5JXC2 388 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 RRAGAQ7L523 313 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 NHEJ1Q9H9Q4 299 aaPredicted RBP18.84■□□□□ 0.61
USP28-208ENST00000540438 PODXL2Q9NZ53 605 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 TRAF5O00463 557 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 RAD17O75943 681 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 GH2P01242 217 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 KRT18P05783 430 aaKnown RBP18.84■□□□□ 0.61
USP28-208ENST00000540438 PABPC4Q13310 644 aaKnown RBP eCLIP18.84■□□□□ 0.61
USP28-208ENST00000540438 TMEM266Q2M3C6 531 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 CRAMP1Q96RY5 1269 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 LZTS2Q9BRK4 669 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 MYH1P12882 1939 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 PNMA6FA0A0J9YX94 578 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 GOLGA1Q92805 767 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 SH2D3AQ9BRG2 576 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 FAM198AQ9UFP1 575 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 LAMB1P07942 1786 aa18.83■□□□□ 0.61
USP28-208ENST00000540438 CENPFP49454 3210 aa18.83■□□□□ 0.61
USP28-208ENST00000540438 N4BP1O75113 896 aaKnown RBP18.83■□□□□ 0.61
USP28-208ENST00000540438 ADRA2BP18089 450 aa18.83■□□□□ 0.61
USP28-208ENST00000540438 CDC37Q16543 378 aaPredicted RBP18.83■□□□□ 0.61
USP28-208ENST00000540438 CC2D1AQ6P1N0 951 aaPredicted RBP18.83■□□□□ 0.61
USP28-208ENST00000540438 KSR1Q8IVT5 923 aa18.83■□□□□ 0.6
USP28-208ENST00000540438 CUL5Q93034 780 aa18.83■□□□□ 0.6
USP28-208ENST00000540438 CCDC47Q96A33 483 aaKnown RBP18.83■□□□□ 0.6
USP28-208ENST00000540438 FAM163AQ96GL9 167 aaPredicted RBP18.83■□□□□ 0.6
USP28-208ENST00000540438 PRMT6Q96LA8 375 aaPredicted RBP18.83■□□□□ 0.6
USP28-208ENST00000540438 NAPGQ99747 312 aaPredicted RBP18.83■□□□□ 0.6
USP28-208ENST00000540438 JADE2Q9NQC1 790 aa18.83■□□□□ 0.6
USP28-208ENST00000540438 ZNF263O14978 683 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 C21orf2O43822 256 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 ECE2O60344 883 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 TBC1D8O95759 1140 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 NAP1L1P55209 391 aaKnown RBP18.82■□□□□ 0.6
USP28-208ENST00000540438 BMS1Q14692 1282 aaKnown RBP18.82■□□□□ 0.6
USP28-208ENST00000540438 HERC4Q5GLZ8 1057 aaPredicted RBP18.82■□□□□ 0.6
USP28-208ENST00000540438 CCDC174Q6PII3 467 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 PKNOX2Q96KN3 472 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.82■□□□□ 0.62e-6■■■■■ 149.1
USP28-208ENST00000540438 BMP2KQ9NSY1 1161 aaPredicted RBP18.82■□□□□ 0.6
USP28-208ENST00000540438 CDC23Q9UJX2 597 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 NAV1Q8NEY1 1877 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 GOLGA6L9A6NEM1 432 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 ZBTB5O15062 677 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 NCK2O43639 380 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 BUB1O43683 1085 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 ANKZF1Q9H8Y5 726 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 ARGLU1Q9NWB6 273 aaPredicted RBP18.82■□□□□ 0.6
USP28-208ENST00000540438 ICA1Q05084 483 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 KCNB1Q14721 858 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 ASPRV1Q53RT3 343 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 GALNT17Q6IS24 598 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 SIAH1Q8IUQ4 282 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 MMS19Q96T76 1030 aa18.82■□□□□ 0.6
USP28-208ENST00000540438 CASP5P51878 434 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 VSNL1P62760 191 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 DGKZQ13574 1117 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 MAEAQ7L5Y9 396 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 NOC3LQ8WTT2 800 aaKnown RBP18.81■□□□□ 0.6
USP28-208ENST00000540438 RAD54LQ92698 747 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 C7orf25Q9BPX7 421 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 DEF6Q9H4E7 631 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 RGL1Q9NZL6 768 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 RSPH10B2B2RC85 870 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 F5H6K3 240 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 MED24O75448 989 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 RSPH10BP0C881 870 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 PRPHP41219 470 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 KLRC3Q07444 240 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 C15orf52Q6ZUT6 534 aaKnown RBP18.81■□□□□ 0.6
USP28-208ENST00000540438 RSRC2Q7L4I2 434 aaKnown RBP18.81■□□□□ 0.6
USP28-208ENST00000540438 SRGAP1Q7Z6B7 1085 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 JAKMIP2Q96AA8 810 aa18.81■□□□□ 0.6
USP28-208ENST00000540438 PYM1Q9BRP8 204 aaKnown RBP18.81■□□□□ 0.6
USP28-208ENST00000540438 A0A1W2PRG0 241 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 DNM2P50570 870 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 PLS1Q14651 629 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 CCDC40Q4G0X9 1142 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 TDRD12Q587J7 1177 aaKnown RBP18.8■□□□□ 0.6
USP28-208ENST00000540438 GPBP1Q86WP2 473 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 ACER1Q8TDN7 264 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 PIGOQ8TEQ8 1089 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 NDST4Q9H3R1 872 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 THAP9Q9H5L6 903 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 VEZTQ9HBM0 779 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 ABCB6Q9NP58 842 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 PANK4Q9NVE7 773 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 TAF1LQ8IZX4 1826 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 LRRC53A6NM62 1247 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 MOCS3O95396 460 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 NPR1P16066 1061 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 EEF1GP26641 437 aaKnown RBP18.8■□□□□ 0.6
USP28-208ENST00000540438 POLD1P28340 1107 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 AMPD3Q01432 767 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 KCNA1Q09470 495 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 CNNM4Q6P4Q7 775 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 CCDC42Q96M95 316 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms