RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 C7orf31Q8N865 590 aa13.68□□□□□ -0.22
CLSTN3-209ENST00000539982 FSD1Q9BTV5 496 aa13.68□□□□□ -0.22
CLSTN3-209ENST00000539982 TCP11L1Q9NUJ3 509 aa13.68□□□□□ -0.22
CLSTN3-209ENST00000539982 HDAC6Q9UBN7 1215 aa13.68□□□□□ -0.22
CLSTN3-209ENST00000539982 GTF2IRD1Q9UHL9 959 aa13.68□□□□□ -0.22
CLSTN3-209ENST00000539982 CTNNA3Q9UI47 895 aa13.68□□□□□ -0.22
CLSTN3-209ENST00000539982 INSL6Q9Y581 213 aa13.68□□□□□ -0.22
CLSTN3-209ENST00000539982 TTC41PQ6P2S7 1318 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 POTEB3A0JP26 581 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 PDHBP11177 359 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 MRE11P49959 708 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 ARHGAP1Q07960 439 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 PTK7Q13308 1070 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 LY6KQ17RY6 165 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 FAM117BQ6P1L5 589 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 POTEBQ6S5H4 581 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 FBXO22Q8NEZ5 403 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 NEK9Q8TD19 979 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 MAF1Q9H063 256 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 KCNH6Q9H252 994 aa13.67□□□□□ -0.22
CLSTN3-209ENST00000539982 ZNF543Q08ER8 600 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 DGKDQ16760 1214 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 PTPROQ16827 1216 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 TRIM71Q2Q1W2 868 aaKnown RBP13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 TRAF7Q6Q0C0 670 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 SEPT14Q6ZU15 432 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 CHST3Q7LGC8 479 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 PI4K2BQ8TCG2 481 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 MRPL38Q96DV4 380 aaKnown RBP13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 TTC14Q96N46 770 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 C17orf80Q9BSJ5 609 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 SIP14410 1827 aa13.66□□□□□ -0.22
CLSTN3-209ENST00000539982 DCXO43602 365 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 LGR5O75473 907 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 AMHP03971 560 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 PSEN2P49810 448 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 HTRA4P83105 476 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 NHLH1Q02575 133 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 ALX1Q15699 326 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 STXBP2Q15833 593 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 ZNF618Q5T7W0 954 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.65□□□□□ -0.221e-12■■■■□ 24.8
CLSTN3-209ENST00000539982 SP7Q8TDD2 431 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 NSUN6Q8TEA1 469 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 TAAR1Q96RJ0 339 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 IWS1Q96ST2 819 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 ALG1Q9BT22 464 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 KATNAL1Q9BW62 490 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 TOMM22Q9NS69 142 aa13.65□□□□□ -0.22
CLSTN3-209ENST00000539982 H3BQ06 376 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 HAS3O00219 553 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 SNHG28P0DPA3 235 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 MBTPS1Q14703 1052 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 KIAA0753Q2KHM9 967 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 USH1GQ495M9 461 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 EPC2Q52LR7 807 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 RRP12Q5JTH9 1297 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 VPS53Q5VIR6 699 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 TBC1D5Q92609 795 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 EMID1Q96A84 441 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 FBXL18Q96ME1 805 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 SAMD11Q96NU1 681 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 PRKAG3Q9UGI9 489 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 DDX41Q9UJV9 622 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 FAM50BQ9Y247 325 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 EMSYQ7Z589 1322 aa13.64□□□□□ -0.23
CLSTN3-209ENST00000539982 H3BNC9 293 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 EIF3JO75822 258 aaKnown RBP13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 F2P00734 622 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 MKRN4PQ13434 485 aaPredicted RBP13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 LAMC2Q13753 1193 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 MFSD10Q14728 455 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 TIGD5Q53EQ6 642 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 C20orf194Q5TEA3 1177 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 MYOCDQ8IZQ8 938 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 MIER1Q8N108 512 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 BANK1Q8NDB2 785 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 DBF4BQ8NFT6 615 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 SYTL5Q8TDW5 730 aaPredicted RBP13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 WNT8BQ93098 351 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 PABPC5Q96DU9 382 aaKnown RBP13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 RMDN3Q96TC7 470 aa13.63□□□□□ -0.23
CLSTN3-209ENST00000539982 C19orf67A6NJJ6 358 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 RSPH10B2B2RC85 870 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 PPFIA4O75335 1185 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 FGAP02671 866 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 RSPH10BP0C881 870 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 ZNF200P98182 395 aaPredicted RBP13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 ZP2Q05996 745 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 GPM6BQ13491 265 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 COL19A1Q14993 1142 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 GPATCH4Q5T3I0 446 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 MCF2L2Q86YR7 1114 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 DHX37Q8IY37 1157 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 PPTC7Q8NI37 304 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 UPF3BQ9BZI7 483 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 UBA5Q9GZZ9 404 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 HELLSQ9NRZ9 838 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 COL20A1Q9P218 1284 aa13.62□□□□□ -0.23
CLSTN3-209ENST00000539982 ABCB11O95342 1321 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms